RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 ZEB2O60315 1214 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 PGK1P00558 417 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 BMP8BP34820 402 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 RTP1P59025 263 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 CCDC144BQ3MJ40 725 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 BMP2KLQ5H9B9 411 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 MUM1L1Q5H9M0 696 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 C1orf53Q5VUE5 145 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 RNF207Q6ZRF8 634 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 RASGRP2Q7LDG7 609 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 MCF2L2Q86YR7 1114 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 MAP4K1Q92918 833 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 AP5M1Q9H0R1 490 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 VTA1Q9NP79 307 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 PHF24Q9UPV7 400 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 ATP11BQ9Y2G3 1177 aa12.82□□□□□ -0.36
LIG3-214ENST00000592244 COL11A1P12107 1806 aaPredicted RBP12.81□□□□□ -0.36
LIG3-214ENST00000592244 CYP21A2P08686 494 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 C6orf222P0C671 652 aaPredicted RBP12.81□□□□□ -0.36
LIG3-214ENST00000592244 GOLGA8HP0CJ92 632 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 SYN1P17600 705 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 TNFAIP2Q03169 654 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 PTH1RQ03431 593 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 BAATQ14032 418 aaPredicted RBP12.81□□□□□ -0.36
LIG3-214ENST00000592244 WTAPQ15007 396 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 CDC37Q16543 378 aaPredicted RBP12.81□□□□□ -0.36
LIG3-214ENST00000592244 RNF20Q5VTR2 975 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 IQSEC1Q6DN90 963 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 CATIPQ7Z7H3 387 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 RGS22Q8NE09 1264 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 DNERQ8NFT8 737 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 FERMT2Q96AC1 680 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 CCDC136Q96JN2 1154 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 GLT1D1Q96MS3 346 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 UBA5Q9GZZ9 404 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 IL25Q9H293 177 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 MRPL11Q9Y3B7 192 aaKnown RBP12.81□□□□□ -0.36
LIG3-214ENST00000592244 ABCB11O95342 1321 aa12.81□□□□□ -0.36
LIG3-214ENST00000592244 SOWAHBA6NEL2 793 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 E7EWF7 191 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 NFIBO00712 420 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 ADAMTS4O75173 837 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 CALML3P27482 149 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 CST5P28325 142 aaPredicted RBP12.8□□□□□ -0.36
LIG3-214ENST00000592244 MAGEA10P43363 369 aaPredicted RBP12.8□□□□□ -0.36
LIG3-214ENST00000592244 ACLYP53396 1101 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 USH1GQ495M9 461 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 GNASQ5JWF2 1037 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 FBXO11Q86XK2 927 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 ADGRF4Q8IZF3 695 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 TMTC2Q8N394 836 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 VTI1AQ96AJ9 217 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 FGD4Q96M96 766 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 GDF15Q99988 308 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 MTA3Q9BTC8 594 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 UBE2OQ9C0C9 1292 aaKnown RBP12.8□□□□□ -0.36
LIG3-214ENST00000592244 STARD7Q9NQZ5 370 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 RBM8AQ9Y5S9 174 aaKnown RBP12.8□□□□□ -0.36
LIG3-214ENST00000592244 MROH7Q68CQ1 1323 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 SYNRGQ9UMZ2 1314 aa12.8□□□□□ -0.36
LIG3-214ENST00000592244 A0A1W2PQ45 241 aaPredicted RBP12.79□□□□□ -0.36
LIG3-214ENST00000592244 A0A1W2PQY0 241 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 DCDC2CA8MYV0 355 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 KLRF2D3W0D1 207 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 CABYRO75952 493 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 ALDH5A1P51649 535 aaPredicted RBP12.79□□□□□ -0.36
LIG3-214ENST00000592244 GJA9P57773 515 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 PDE4DQ08499 809 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 SNX17Q15036 470 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 SEC23AQ15436 765 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 KCNA10Q16322 511 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 BRDTQ58F21 947 aaPredicted RBP12.79□□□□□ -0.36
LIG3-214ENST00000592244 TMEM67Q5HYA8 995 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 KLHDC9Q8NEP7 349 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 ESYT1Q9BSJ8 1104 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 AMNQ9BXJ7 453 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 SEZ6LQ9BYH1 1024 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 UPF3AQ9H1J1 476 aaKnown RBP12.79□□□□□ -0.36
LIG3-214ENST00000592244 PRO3102Q9H379 93 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 VAT1LQ9HCJ6 419 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 ANO2Q9NQ90 1003 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 PRDM5Q9NQX1 630 aaPredicted RBP12.79□□□□□ -0.36
LIG3-214ENST00000592244 Q9Y3F1 56 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 ELP1O95163 1332 aa12.79□□□□□ -0.36
LIG3-214ENST00000592244 KIF5BP33176 963 aa12.78□□□□□ -0.36
LIG3-214ENST00000592244 MCM5P33992 734 aa12.78□□□□□ -0.36
LIG3-214ENST00000592244 FXR1P51114 621 aaKnown RBP eCLIP12.78□□□□□ -0.36
LIG3-214ENST00000592244 RPS6P62753 249 aaKnown RBP12.78□□□□□ -0.36
LIG3-214ENST00000592244 TRIM60Q495X7 471 aa12.78□□□□□ -0.36
LIG3-214ENST00000592244 CYB5R4Q7L1T6 521 aa12.78□□□□□ -0.36
LIG3-214ENST00000592244 SAMD3Q8N6K7 520 aa12.78□□□□□ -0.36
LIG3-214ENST00000592244 MORC4Q8TE76 937 aa12.78□□□□□ -0.36
LIG3-214ENST00000592244 CLEC4DQ8WXI8 215 aa12.78□□□□□ -0.36
LIG3-214ENST00000592244 NKRFO15226 690 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIG3-214ENST00000592244 TLE2Q04725 743 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 QRICH1Q2TAL8 776 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 SLC30A10Q6XR72 485 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 NFXL1Q6ZNB6 911 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 EEPD1Q7L9B9 569 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 TLK2Q86UE8 772 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms