RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 ZNF467Q7Z7K2 595 aaPredicted RBP13.84□□□□□ -0.19
LIG3-213ENST00000590630 MTMR8Q96EF0 704 aa13.84□□□□□ -0.19
LIG3-213ENST00000590630 MYL10Q9BUA6 226 aa13.84□□□□□ -0.19
LIG3-213ENST00000590630 PDE4DIPQ5VU43 2346 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 ZBTB5O15062 677 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 EN2P19622 333 aaPredicted RBP13.83□□□□□ -0.2
LIG3-213ENST00000590630 CASTP20810 708 aaKnown RBP13.83□□□□□ -0.2
LIG3-213ENST00000590630 SMARCA1P28370 1054 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 CYP2C19P33261 490 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 GNAQP50148 359 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 FGD1P98174 961 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 TRAF1Q13077 416 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 USH1GQ495M9 461 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 APOA5Q6Q788 366 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 MAMDC4Q6UXC1 1216 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 FBXO11Q86XK2 927 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 FBXL16Q8N461 479 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 FAM133AQ8N9E0 248 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 U2AF1L4Q8WU68 220 aaKnown RBP13.83□□□□□ -0.2
LIG3-213ENST00000590630 TCEANC2Q96MN5 208 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 DEFB118Q96PH6 123 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 LZTS2Q9BRK4 669 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 TINF2Q9BSI4 451 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 MAF1Q9H063 256 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 RIOX1Q9H6W3 641 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 VAT1LQ9HCJ6 419 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 CYP39A1Q9NYL5 469 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 NRBP1Q9UHY1 535 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 ABCB11O95342 1321 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 SYNGAP1Q96PV0 1343 aa13.83□□□□□ -0.2
LIG3-213ENST00000590630 POTEB2H3BUK9 544 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 NFIBO00712 420 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 SGPL1O95470 568 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 CYBAP13498 195 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 TAL1P17542 331 aaPredicted RBP13.82□□□□□ -0.2
LIG3-213ENST00000590630 RPS6KB1P23443 525 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 RCAN1P53805 252 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 NSMFQ6X4W1 530 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 MICU3Q86XE3 530 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 FANCBQ8NB91 859 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 CLEC4DQ8WXI8 215 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 SPZ1Q9BXG8 430 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 AMNQ9BXJ7 453 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 TM6SF1Q9BZW5 370 aa13.82□□□□□ -0.2
LIG3-213ENST00000590630 ZBTB43O43298 467 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 CYTH3O43739 400 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 MSCO60682 206 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 CPA1P15085 419 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 CCND3P30281 292 aaPredicted RBP13.81□□□□□ -0.2
LIG3-213ENST00000590630 ANAPC15P60006 121 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 CNTN2Q02246 1040 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 SLC35G1Q2M3R5 365 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 RUFY3Q7L099 469 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 RGS22Q8NE09 1264 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 SHISA4Q96DD7 197 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 FGD4Q96M96 766 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 CRISPLD2Q9H0B8 497 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 ZSWIM6Q9HCJ5 1215 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 CNPY2Q9Y2B0 182 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 MRPL11Q9Y3B7 192 aaKnown RBP13.81□□□□□ -0.2
LIG3-213ENST00000590630 CYP46A1Q9Y6A2 500 aa13.81□□□□□ -0.2
LIG3-213ENST00000590630 PNMA6FA0A0J9YX94 578 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 KLF18A0A0U1RQI7 1052 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 PTPDC1A2A3K4 754 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 TFRCP02786 760 aaKnown RBP13.8□□□□□ -0.2
LIG3-213ENST00000590630 RXRAP19793 462 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 CNGA1P29973 690 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 MLLT1Q03111 559 aaPredicted RBP13.8□□□□□ -0.2
LIG3-213ENST00000590630 BAATQ14032 418 aaPredicted RBP13.8□□□□□ -0.2
LIG3-213ENST00000590630 RNF207Q6ZRF8 634 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 Q6ZUG5 572 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 HOMER1Q86YM7 354 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 MCF2L2Q86YR7 1114 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 CCDC144CPQ8IYA2 1237 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 TRPV1Q8NER1 839 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 RRP36Q96EU6 259 aaKnown RBP13.8□□□□□ -0.2
LIG3-213ENST00000590630 PIGSQ96S52 555 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 AGXT2Q9BYV1 514 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 RBM28Q9NW13 759 aaKnown RBP13.8□□□□□ -0.2
LIG3-213ENST00000590630 ADD3Q9UEY8 706 aaKnown RBP13.8□□□□□ -0.2
LIG3-213ENST00000590630 BRPF3Q9ULD4 1205 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 PCDHA1Q9Y5I3 950 aa13.8□□□□□ -0.2
LIG3-213ENST00000590630 LRRC37A2A6NM11 1700 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 LOC102724159A0A0B4J2E5 919 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 ASB14A6NK59 587 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 SEPT4O43236 478 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 PPP1R11O60927 126 aaPredicted RBP13.79□□□□□ -0.2
LIG3-213ENST00000590630 PLEKHA8P1O95397 391 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 RPS6P62753 249 aaKnown RBP13.79□□□□□ -0.2
LIG3-213ENST00000590630 PPP2R5BQ15173 497 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 PWP2Q15269 919 aaKnown RBP13.79□□□□□ -0.2
LIG3-213ENST00000590630 RTN1Q16799 776 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 SLC30A10Q6XR72 485 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 TMTC3Q6ZXV5 915 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 ARMCX2Q7L311 632 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 SRBD1Q8N5C6 995 aaKnown RBP13.79□□□□□ -0.2
LIG3-213ENST00000590630 ANKLE1Q8NAG6 615 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 BRF1Q92994 677 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 ABHD16BQ9H3Z7 469 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 SEC63Q9UGP8 760 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms