RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 TKFCQ3LXA3 575 aa17.5■□□□□ 0.39
ATG4D-211ENST00000589753 CCDC12Q8WUD4 166 aaPredicted RBP17.5■□□□□ 0.39
ATG4D-211ENST00000589753 BEGAINQ9BUH8 593 aa17.5■□□□□ 0.39
ATG4D-211ENST00000589753 MOV10L1Q9BXT6 1211 aaKnown RBP17.5■□□□□ 0.39
ATG4D-211ENST00000589753 SH3GLB2Q9NR46 395 aa17.5■□□□□ 0.39
ATG4D-211ENST00000589753 SAGE1Q9NXZ1 904 aa17.5■□□□□ 0.39
ATG4D-211ENST00000589753 MRPL11Q9Y3B7 192 aaKnown RBP17.5■□□□□ 0.39
ATG4D-211ENST00000589753 RIPK3Q9Y572 518 aa17.5■□□□□ 0.39
ATG4D-211ENST00000589753 TBC1D8O95759 1140 aa17.49■□□□□ 0.39
ATG4D-211ENST00000589753 PPP1R18Q6NYC8 613 aa17.49■□□□□ 0.39
ATG4D-211ENST00000589753 NCAPG2Q86XI2 1143 aa17.49■□□□□ 0.39
ATG4D-211ENST00000589753 CCDC148Q8NFR7 591 aa17.49■□□□□ 0.39
ATG4D-211ENST00000589753 TRERF1Q96PN7 1200 aa17.49■□□□□ 0.39
ATG4D-211ENST00000589753 R3HDMLQ9H3Y0 253 aa17.49■□□□□ 0.39
ATG4D-211ENST00000589753 HOMER2Q9NSB8 354 aa17.49■□□□□ 0.39
ATG4D-211ENST00000589753 RNF146Q9NTX7 359 aa17.49■□□□□ 0.39
ATG4D-211ENST00000589753 VPS54Q9P1Q0 977 aa17.49■□□□□ 0.39
ATG4D-211ENST00000589753 ERCC3P19447 782 aa17.48■□□□□ 0.39
ATG4D-211ENST00000589753 TRIM29Q14134 588 aa17.48■□□□□ 0.39
ATG4D-211ENST00000589753 TYW1BQ6NUM6 668 aa17.48■□□□□ 0.39
ATG4D-211ENST00000589753 CCAR1Q8IX12 1150 aaKnown RBP17.48■□□□□ 0.39
ATG4D-211ENST00000589753 FAM177A1Q8N128 213 aaPredicted RBP17.48■□□□□ 0.39
ATG4D-211ENST00000589753 SHCBP1Q8NEM2 672 aa17.48■□□□□ 0.39
ATG4D-211ENST00000589753 CHST13Q8NET6 341 aa17.48■□□□□ 0.39
ATG4D-211ENST00000589753 C8orf76Q96K31 380 aa17.48■□□□□ 0.39
ATG4D-211ENST00000589753 FOSBP53539 338 aa17.47■□□□□ 0.39
ATG4D-211ENST00000589753 MUM1L1Q5H9M0 696 aa17.47■□□□□ 0.39
ATG4D-211ENST00000589753 CLEC4DQ8WXI8 215 aa17.47■□□□□ 0.39
ATG4D-211ENST00000589753 SHISA4Q96DD7 197 aa17.47■□□□□ 0.39
ATG4D-211ENST00000589753 PORCNQ9H237 461 aa17.47■□□□□ 0.39
ATG4D-211ENST00000589753 MROH8Q9H579 483 aa17.47■□□□□ 0.39
ATG4D-211ENST00000589753 ACAD9Q9H845 621 aa17.47■□□□□ 0.39
ATG4D-211ENST00000589753 CWC22Q9HCG8 908 aaKnown RBP17.47■□□□□ 0.39
ATG4D-211ENST00000589753 FBXO40Q9UH90 709 aa17.47■□□□□ 0.39
ATG4D-211ENST00000589753 ESYT2A0FGR8 921 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 SMCO2A6NFE2 343 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 PDCP20941 246 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 NLRP5P59047 1200 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 WDR78Q5VTH9 848 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 LARP1BQ659C4 914 aaKnown RBP17.46■□□□□ 0.39
ATG4D-211ENST00000589753 MCF2L2Q86YR7 1114 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 IPO9Q96P70 1041 aaKnown RBP17.46■□□□□ 0.39
ATG4D-211ENST00000589753 ZMYND12Q9H0C1 365 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 EFCC1Q9HA90 598 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 C6orf50Q9HD87 102 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 GJB4Q9NTQ9 266 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 WBP1LQ9NX94 342 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 KCNJ14Q9UNX9 436 aa17.46■□□□□ 0.39
ATG4D-211ENST00000589753 NFIBO00712 420 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 OPLAHO14841 1288 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 GNA11P29992 359 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 MAPK4P31152 587 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 ADCY7P51828 1080 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 KRT40Q6A162 431 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 FBXO18Q8NFZ0 1043 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 CUL5Q93034 780 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 PHF20Q9BVI0 1012 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 GLT8D2Q9H1C3 349 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 PSTPIP2Q9H939 334 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 RIC8AQ9NPQ8 531 aa17.45■□□□□ 0.38
ATG4D-211ENST00000589753 CALML3P27482 149 aa17.44■□□□□ 0.38
ATG4D-211ENST00000589753 MRPL12P52815 198 aaKnown RBP17.44■□□□□ 0.38
ATG4D-211ENST00000589753 GUCY1B3Q02153 619 aa17.44■□□□□ 0.38
ATG4D-211ENST00000589753 SP3Q02447 781 aa17.44■□□□□ 0.38
ATG4D-211ENST00000589753 GALNT17Q6IS24 598 aa17.44■□□□□ 0.38
ATG4D-211ENST00000589753 NSMFQ6X4W1 530 aa17.44■□□□□ 0.38
ATG4D-211ENST00000589753 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.44■□□□□ 0.38
ATG4D-211ENST00000589753 JMYQ8N9B5 988 aa17.44■□□□□ 0.38
ATG4D-211ENST00000589753 RGS22Q8NE09 1264 aa17.44■□□□□ 0.38
ATG4D-211ENST00000589753 MAF1Q9H063 256 aa17.44■□□□□ 0.38
ATG4D-211ENST00000589753 SMCHD1A6NHR9 2005 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 H3BQV1 296 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 GCOM1H8Y6P7 765 aaPredicted RBP17.43■□□□□ 0.38
ATG4D-211ENST00000589753 GPR25O00155 361 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 CFBP00751 764 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 MMP1P03956 469 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 POLR2MP0CAP2 368 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 SYT1P21579 422 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 KCTD2Q14681 263 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 IFFO2Q5TF58 517 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 RNF207Q6ZRF8 634 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 GPR142Q7Z601 462 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 TEX2Q8IWB9 1127 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 ANKRD35Q8N283 1001 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 SAMD3Q8N6K7 520 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 BICD2Q8TD16 824 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 MMP19Q99542 508 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 BRMS1Q9HCU9 246 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 A1CFQ9NQ94 594 aaKnown RBP17.43■□□□□ 0.38
ATG4D-211ENST00000589753 PCDHA4Q9UN74 947 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 IVNS1ABPQ9Y6Y0 642 aa17.43■□□□□ 0.38
ATG4D-211ENST00000589753 RBBP6Q7Z6E9 1792 aaKnown RBP17.43■□□□□ 0.38
ATG4D-211ENST00000589753 STRNO43815 780 aa17.42■□□□□ 0.38
ATG4D-211ENST00000589753 ECM2O94769 699 aaPredicted RBP17.42■□□□□ 0.38
ATG4D-211ENST00000589753 FCER1AP12319 257 aa17.42■□□□□ 0.38
ATG4D-211ENST00000589753 HSD17B4P51659 736 aa17.42■□□□□ 0.38
ATG4D-211ENST00000589753 LACTBP83111 547 aaPredicted RBP17.42■□□□□ 0.38
ATG4D-211ENST00000589753 GHRHRQ02643 423 aa17.42■□□□□ 0.38
ATG4D-211ENST00000589753 KIF22Q14807 665 aa17.42■□□□□ 0.38
ATG4D-211ENST00000589753 SAFBQ15424 915 aaKnown RBP eCLIP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms