RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 PGRP06401 933 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 GRIA2P42262 883 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 ITKQ08881 620 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 MTMR1Q13613 665 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 TMEM201Q5SNT2 666 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 SFRP5Q5T4F7 317 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 SYCP2LQ5T4T6 812 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 SCUBE1Q8IWY4 988 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 CHPFQ8IZ52 775 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 MYO1HQ8N1T3 1032 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 LRRN4CLQ8ND94 238 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 WDR66Q8TBY9 1149 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 SMAD5Q99717 465 aaKnown RBP6.41□□□□□ -1.38
SS18-223ENST00000583595 RC3H2Q9HBD1 1191 aaKnown RBP6.41□□□□□ -1.38
SS18-223ENST00000583595 GOLGA2P5Q9HBQ8 144 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 ZIM2Q9NZV7 527 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 LRP2BPQ9P2M1 347 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 TJP2Q9UDY2 1190 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 SUSD2Q9UGT4 822 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 FAM155AB1AL88 458 aaPredicted RBP6.4□□□□□ -1.38
SS18-223ENST00000583595 AGRPO00253 132 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 PRODHO43272 600 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 DNAJC8O75937 253 aaPredicted RBP6.4□□□□□ -1.38
SS18-223ENST00000583595 PAPLNO95428 1278 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 ATF3P18847 181 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 CLCN7P51798 805 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 PPP2R2AP63151 447 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 IKZF1Q13422 519 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 HSP90AA2PQ14568 343 aaPredicted RBP6.4□□□□□ -1.38
SS18-223ENST00000583595 TSHZ1Q6ZSZ6 1077 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 TMEM192Q8IY95 271 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 TTC8Q8TAM2 541 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 SLC7A14Q8TBB6 771 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 PPP1R14AQ96A00 147 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 ACSF2Q96CM8 615 aaPredicted RBP6.4□□□□□ -1.38
SS18-223ENST00000583595 SLC39A13Q96H72 371 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 TRIM8Q9BZR9 551 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 MTFR1LQ9H019 292 aa6.4□□□□□ -1.38
SS18-223ENST00000583595 BIN1O00499 593 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 CREB3O43889 395 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 KRT18P05783 430 aaKnown RBP6.39□□□□□ -1.39
SS18-223ENST00000583595 RAG1P15918 1043 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 PDE6BP35913 854 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 NEK2P51955 445 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 NEK4P51957 841 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 PDE4BQ07343 736 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 TDRD10Q5VZ19 366 aaKnown RBP6.39□□□□□ -1.39
SS18-223ENST00000583595 CCSAPQ6IQ19 270 aaPredicted RBP6.39□□□□□ -1.39
SS18-223ENST00000583595 SLC23A3Q6PIS1 610 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 C22orf34Q6ZV56 151 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 CDH24Q86UP0 819 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 PPFIBP1Q86W92 1011 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 MRPL41Q8IXM3 137 aaKnown RBP6.39□□□□□ -1.39
SS18-223ENST00000583595 MFSD4AQ8N468 514 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 RELTQ969Z4 430 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 TMEM87BQ96K49 555 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 FGD4Q96M96 766 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 DPH2Q9BQC3 489 aaPredicted RBP6.39□□□□□ -1.39
SS18-223ENST00000583595 AARSD1Q9BTE6 412 aaKnown RBP6.39□□□□□ -1.39
SS18-223ENST00000583595 MRPL4Q9BYD3 311 aaKnown RBP6.39□□□□□ -1.39
SS18-223ENST00000583595 ARNT2Q9HBZ2 717 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 PRDM7Q9NQW5 492 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 NOB1Q9ULX3 412 aaKnown RBP6.39□□□□□ -1.39
SS18-223ENST00000583595 PITPNM2Q9BZ72 1349 aa6.39□□□□□ -1.39
SS18-223ENST00000583595 ANKRD34BA5PLL1 514 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 C9IYK1 514 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 CBX7O95931 251 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 ITGAVP06756 1048 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 ZNF865P0CJ78 1059 aaPredicted RBP6.38□□□□□ -1.39
SS18-223ENST00000583595 PABPC1P11940 636 aaKnown RBP6.38□□□□□ -1.39
SS18-223ENST00000583595 ZEB1P37275 1124 aaPredicted RBP6.38□□□□□ -1.39
SS18-223ENST00000583595 ZP2Q05996 745 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 CDKAL1Q5VV42 579 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 SLC6A19Q695T7 634 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 PPP4R4Q6NUP7 873 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 PKN3Q6P5Z2 889 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 NSMFQ6X4W1 530 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 ATG4DQ86TL0 474 aaPredicted RBP6.38□□□□□ -1.39
SS18-223ENST00000583595 KRTAP19-1Q8IUB9 90 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 MTMR8Q96EF0 704 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 HSPA12BQ96MM6 686 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 MPHOSPH6Q99547 160 aaKnown RBP6.38□□□□□ -1.39
SS18-223ENST00000583595 YIPF4Q9BSR8 244 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 INTS7Q9NVH2 962 aaKnown RBP6.38□□□□□ -1.39
SS18-223ENST00000583595 APEX2Q9UBZ4 518 aa6.38□□□□□ -1.39
SS18-223ENST00000583595 RBAK-RBAKDNI3L0D1 243 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 PRPF3O43395 683 aaKnown RBP6.37□□□□□ -1.39
SS18-223ENST00000583595 TBX1O43435 398 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 EPHX1P07099 455 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 CPEP16870 476 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 CYP7A1P22680 504 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 STAT4Q14765 748 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 RNF219Q5W0B1 726 aaPredicted RBP6.37□□□□□ -1.39
SS18-223ENST00000583595 FGD2Q7Z6J4 655 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 MCATQ8IVS2 390 aaKnown RBP6.37□□□□□ -1.39
SS18-223ENST00000583595 AHI1Q8N157 1196 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 OSBP2Q969R2 916 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 HOOK2Q96ED9 719 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 SLC6A18Q96N87 628 aa6.37□□□□□ -1.39
SS18-223ENST00000583595 TRIM39Q9HCM9 518 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms