RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 STXBP3O00186 592 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 FKTNO75072 461 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 GDF11O95390 407 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 TBC1D8O95759 1140 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 MCM7P33993 719 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 NOVP48745 357 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 ADCY7P51828 1080 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 MRPL12P52815 198 aaKnown RBP10.57□□□□□ -0.72
SS18-220ENST00000582092 ZNF543Q08ER8 600 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 PPIL2Q13356 520 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 SNAPC2Q13487 334 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 SEPT2Q15019 361 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 PTPAQ15257 358 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 PKN2Q16513 984 aaKnown RBP10.57□□□□□ -0.72
SS18-220ENST00000582092 CCL15Q16663 113 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 WWC2Q6AWC2 1192 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 CDAN1Q8IWY9 1227 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 ZNF579Q8NAF0 562 aaKnown RBP10.57□□□□□ -0.72
SS18-220ENST00000582092 DAGLBQ8NCG7 672 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 CNNM3Q8NE01 707 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 MKL1Q969V6 931 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 PANK2Q9BZ23 570 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 RIOX1Q9H6W3 641 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 KCNH3Q9ULD8 1083 aa10.57□□□□□ -0.72
SS18-220ENST00000582092 SRPRBQ9Y5M8 271 aaKnown RBP10.57□□□□□ -0.72
SS18-220ENST00000582092 DDX60LQ5H9U9 1706 aaKnown RBP10.57□□□□□ -0.72
SS18-220ENST00000582092 ATRNL1Q5VV63 1379 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 DOCK1Q14185 1865 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.56□□□□□ -0.72
SS18-220ENST00000582092 TESPA1A2RU30 521 aaPredicted RBP10.56□□□□□ -0.72
SS18-220ENST00000582092 GPR25O00155 361 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 MARCH6O60337 910 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 TBC1D12O60347 775 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 CAPN15O75808 1086 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 GH2P01242 217 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 PTPREP23469 700 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 TOB1P50616 345 aaPredicted RBP10.56□□□□□ -0.72
SS18-220ENST00000582092 NONOQ15233 471 aaKnown RBP eCLIP10.56□□□□□ -0.72
SS18-220ENST00000582092 ANO6Q4KMQ2 910 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 NOL9Q5SY16 702 aaKnown RBP10.56□□□□□ -0.72
SS18-220ENST00000582092 AXDND1Q5T1B0 1012 aaPredicted RBP10.56□□□□□ -0.72
SS18-220ENST00000582092 RESP18Q5W5W9 173 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 KCTD1Q719H9 257 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 CTU1Q7Z7A3 348 aaKnown RBP10.56□□□□□ -0.72
SS18-220ENST00000582092 CEP57L1Q8IYX8 460 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 ADGRF4Q8IZF3 695 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 FMR1NBQ8N0W7 255 aaPredicted RBP10.56□□□□□ -0.72
SS18-220ENST00000582092 ENGASEQ8NFI3 743 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 RASSF8Q8NHQ8 419 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 FAM200AQ8TCP9 573 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 ZKSCAN4Q969J2 545 aaPredicted RBP10.56□□□□□ -0.72
SS18-220ENST00000582092 CLIC6Q96NY7 704 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 ZFYVE28Q9HCC9 887 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 ZCCHC17Q9NP64 241 aaKnown RBP10.56□□□□□ -0.72
SS18-220ENST00000582092 ZNF112Q9UJU3 913 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 ATAD5Q96QE3 1844 aa10.56□□□□□ -0.72
SS18-220ENST00000582092 COL2A1P02458 1487 aaPredicted RBP10.55□□□□□ -0.72
SS18-220ENST00000582092 F5H6K3 240 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 ZBTB5O15062 677 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 CYTH3O43739 400 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 CTNND1O60716 968 aaKnown RBP10.55□□□□□ -0.72
SS18-220ENST00000582092 SMC2O95347 1197 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 INPP5BP32019 993 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 ZNF165P49910 485 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 KLRC3Q07444 240 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 PTGDRQ13258 359 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 SNW1Q13573 536 aaKnown RBP10.55□□□□□ -0.72
SS18-220ENST00000582092 TAF1CQ15572 869 aaPredicted RBP10.55□□□□□ -0.72
SS18-220ENST00000582092 MCTP2Q6DN12 878 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 PPP1R18Q6NYC8 613 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 SH3BP5LQ7L8J4 393 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 METTL16Q86W50 562 aaKnown RBP10.55□□□□□ -0.72
SS18-220ENST00000582092 CLEC10AQ8IUN9 316 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 SCYL3Q8IZE3 742 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 REXO1Q8N1G1 1221 aaKnown RBP10.55□□□□□ -0.72
SS18-220ENST00000582092 CUL5Q93034 780 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 ERO1AQ96HE7 468 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 ABHD8Q96I13 439 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 MS4A4AQ96JQ5 239 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 ZMYND12Q9H0C1 365 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 CPVLQ9H3G5 476 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 USP25Q9UHP3 1055 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 SYNPO2Q9UMS6 1093 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 PCDHA6Q9UN73 950 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 PCDHA8Q9Y5H6 950 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 SNCAIPQ9Y6H5 919 aa10.55□□□□□ -0.72
SS18-220ENST00000582092 ESYT2A0FGR8 921 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 VWA3AA6NCI4 1184 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 LAD1O00515 517 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 CXCL11O14625 94 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 IRF6O14896 467 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 SNHG28P0DPA3 235 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 BMP3P12645 472 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 SLC16A2P36021 539 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 GJA5P36382 358 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 MAP3K10Q02779 954 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 KIF22Q14807 665 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 ARL6IP4Q66PJ3 421 aaKnown RBP10.54□□□□□ -0.72
SS18-220ENST00000582092 SHC4Q6S5L8 630 aa10.54□□□□□ -0.72
SS18-220ENST00000582092 DTHD1Q6ZMT9 781 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms