RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 FMNL2Q96PY5 1086 aa9.83□□□□□ -0.84
SS18-214ENST00000580003 JMJD8Q96S16 334 aa9.83□□□□□ -0.84
SS18-214ENST00000580003 PLCD4Q9BRC7 762 aa9.83□□□□□ -0.84
SS18-214ENST00000580003 CRTAC1Q9NQ79 661 aa9.83□□□□□ -0.84
SS18-214ENST00000580003 CYP26B1Q9NR63 512 aa9.83□□□□□ -0.84
SS18-214ENST00000580003 TRBV23OR9-2A0A075B6M9 112 aa9.82□□□□□ -0.84
SS18-214ENST00000580003 IQCA1LA6NCM1 817 aa9.82□□□□□ -0.84
SS18-214ENST00000580003 TXKP42681 527 aa9.82□□□□□ -0.84
SS18-214ENST00000580003 GALK1P51570 392 aa9.82□□□□□ -0.84
SS18-214ENST00000580003 NUP43Q8NFH3 380 aa9.82□□□□□ -0.84
SS18-214ENST00000580003 ST13P5Q8NFI4 369 aaPredicted RBP9.82□□□□□ -0.84
SS18-214ENST00000580003 SHISA4Q96DD7 197 aa9.82□□□□□ -0.84
SS18-214ENST00000580003 INTS4Q96HW7 963 aaKnown RBP9.82□□□□□ -0.84
SS18-214ENST00000580003 NKX2-4Q9H2Z4 354 aa9.82□□□□□ -0.84
SS18-214ENST00000580003 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.82□□□□□ -0.84
SS18-214ENST00000580003 PNLIPP16233 465 aa9.81□□□□□ -0.84
SS18-214ENST00000580003 PRKCAP17252 672 aa9.81□□□□□ -0.84
SS18-214ENST00000580003 PAMP19021 973 aa9.81□□□□□ -0.84
SS18-214ENST00000580003 PDE6BP35913 854 aa9.81□□□□□ -0.84
SS18-214ENST00000580003 ARL4AP40617 200 aa9.81□□□□□ -0.84
SS18-214ENST00000580003 CEBPAP49715 358 aaPredicted RBP9.81□□□□□ -0.84
SS18-214ENST00000580003 LAPTM5Q13571 262 aa9.81□□□□□ -0.84
SS18-214ENST00000580003 IRF2BP1Q8IU81 584 aa9.81□□□□□ -0.84
SS18-214ENST00000580003 DIRC2Q96SL1 478 aa9.81□□□□□ -0.84
SS18-214ENST00000580003 NSUN3Q9H649 340 aaKnown RBP9.81□□□□□ -0.84
SS18-214ENST00000580003 IMPACTQ9P2X3 320 aa9.81□□□□□ -0.84
SS18-214ENST00000580003 NPHP3-ACAD11A0A0J9YXS1 232 aa9.8□□□□□ -0.84
SS18-214ENST00000580003 CCDC85CA6NKD9 419 aa9.8□□□□□ -0.84
SS18-214ENST00000580003 TBX1O43435 398 aa9.8□□□□□ -0.84
SS18-214ENST00000580003 HOXC12P31275 282 aa9.8□□□□□ -0.84
SS18-214ENST00000580003 L1CAMP32004 1257 aa9.8□□□□□ -0.84
SS18-214ENST00000580003 CYP4F8P98187 520 aa9.8□□□□□ -0.84
SS18-214ENST00000580003 PRR23BQ6ZRT6 265 aa9.8□□□□□ -0.84
SS18-214ENST00000580003 ACSL6Q9UKU0 697 aa9.8□□□□□ -0.84
SS18-214ENST00000580003 A0A1W2PQJ5 194 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 PDPK1O15530 556 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 EFEMP2O95967 443 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 SNRPB2P08579 225 aaKnown RBP9.79□□□□□ -0.84
SS18-214ENST00000580003 KCNJ6P48051 423 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 PMFBP1Q8TBY8 1022 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 COPS5Q92905 334 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 SGSM3Q96HU1 749 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 DRC1Q96MC2 740 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 CCDC140Q96MF4 163 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 EPB41L4BQ9H329 900 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 DCP1AQ9NPI6 582 aaPredicted RBP9.79□□□□□ -0.84
SS18-214ENST00000580003 MSRB2Q9Y3D2 182 aa9.79□□□□□ -0.84
SS18-214ENST00000580003 FARP2O94887 1054 aaPredicted RBP9.78□□□□□ -0.84
SS18-214ENST00000580003 PLS3P13797 630 aa9.78□□□□□ -0.84
SS18-214ENST00000580003 ECI1P42126 302 aa9.78□□□□□ -0.84
SS18-214ENST00000580003 RBM10P98175 930 aaKnown RBP9.78□□□□□ -0.84
SS18-214ENST00000580003 KIR3DS1Q14943 382 aa9.78□□□□□ -0.84
SS18-214ENST00000580003 ADGRF1Q5T601 910 aa9.78□□□□□ -0.84
SS18-214ENST00000580003 OGFOD2Q6N063 350 aa9.78□□□□□ -0.84
SS18-214ENST00000580003 CCDC113Q9H0I3 377 aa9.78□□□□□ -0.84
SS18-214ENST00000580003 GPRC5CQ9NQ84 441 aa9.78□□□□□ -0.84
SS18-214ENST00000580003 CLEC1BQ9P126 229 aa9.78□□□□□ -0.84
SS18-214ENST00000580003 A0A1W2PQU0 124 aa9.77□□□□□ -0.85
SS18-214ENST00000580003 OR14I1A6ND48 311 aa9.77□□□□□ -0.85
SS18-214ENST00000580003 CPP00450 1065 aa9.77□□□□□ -0.85
SS18-214ENST00000580003 THBDP07204 575 aa9.77□□□□□ -0.85
SS18-214ENST00000580003 PPP2R2AP63151 447 aa9.77□□□□□ -0.85
SS18-214ENST00000580003 RASGRF1Q13972 1273 aa9.77□□□□□ -0.85
SS18-214ENST00000580003 HSP90AA2PQ14568 343 aaPredicted RBP9.77□□□□□ -0.85
SS18-214ENST00000580003 CPNE8Q86YQ8 564 aa9.77□□□□□ -0.85
SS18-214ENST00000580003 LRRC47Q8N1G4 583 aaKnown RBP9.77□□□□□ -0.85
SS18-214ENST00000580003 CORO7P57737 925 aa9.76□□□□□ -0.85
SS18-214ENST00000580003 MVKQ03426 396 aa9.76□□□□□ -0.85
SS18-214ENST00000580003 SERINC3Q13530 473 aa9.76□□□□□ -0.85
SS18-214ENST00000580003 MTERF2Q49AM1 385 aa9.76□□□□□ -0.85
SS18-214ENST00000580003 ZNF669Q96BR6 464 aaPredicted RBP9.76□□□□□ -0.85
SS18-214ENST00000580003 DNAJC2Q99543 621 aaKnown RBP9.76□□□□□ -0.85
SS18-214ENST00000580003 NPHS1O60500 1241 aa9.75□□□□□ -0.85
SS18-214ENST00000580003 MPOP05164 745 aa9.75□□□□□ -0.85
SS18-214ENST00000580003 POU5F2Q8N7G0 328 aa9.75□□□□□ -0.85
SS18-214ENST00000580003 FBXO15Q8NCQ5 510 aaPredicted RBP9.75□□□□□ -0.85
SS18-214ENST00000580003 MMP19Q99542 508 aa9.75□□□□□ -0.85
SS18-214ENST00000580003 PDLIM7Q9NR12 457 aa9.75□□□□□ -0.85
SS18-214ENST00000580003 SCG5P05408 212 aa9.74□□□□□ -0.85
SS18-214ENST00000580003 GFRA1P56159 465 aa9.74□□□□□ -0.85
SS18-214ENST00000580003 IFRD2Q12894 506 aaPredicted RBP9.74□□□□□ -0.85
SS18-214ENST00000580003 IQCEQ6IPM2 695 aa9.74□□□□□ -0.85
SS18-214ENST00000580003 ZNF605Q86T29 641 aa9.74□□□□□ -0.85
SS18-214ENST00000580003 NLGN2Q8NFZ4 835 aa9.74□□□□□ -0.85
SS18-214ENST00000580003 FRS2Q8WU20 508 aa9.74□□□□□ -0.85
SS18-214ENST00000580003 FAM84AQ96KN4 292 aa9.74□□□□□ -0.85
SS18-214ENST00000580003 SLC38A3Q99624 504 aa9.74□□□□□ -0.85
SS18-214ENST00000580003 AARSD1Q9BTE6 412 aaKnown RBP9.74□□□□□ -0.85
SS18-214ENST00000580003 MEFVO15553 781 aaPredicted RBP9.73□□□□□ -0.85
SS18-214ENST00000580003 MSL3P1P0C860 447 aa9.73□□□□□ -0.85
SS18-214ENST00000580003 SDHBP21912 280 aa9.73□□□□□ -0.85
SS18-214ENST00000580003 ERVFRD-1P60508 538 aa9.73□□□□□ -0.85
SS18-214ENST00000580003 SF1Q15637 639 aaKnown RBP9.73□□□□□ -0.85
SS18-214ENST00000580003 E4F1Q66K89 784 aaPredicted RBP9.73□□□□□ -0.85
SS18-214ENST00000580003 BICRALQ6AI39 1079 aa9.73□□□□□ -0.85
SS18-214ENST00000580003 LRP10Q7Z4F1 713 aa9.73□□□□□ -0.85
SS18-214ENST00000580003 NPLOC4Q8TAT6 608 aa9.73□□□□□ -0.85
SS18-214ENST00000580003 KCTD13Q8WZ19 329 aa9.73□□□□□ -0.85
SS18-214ENST00000580003 UBXN4Q92575 508 aa9.73□□□□□ -0.85
SS18-214ENST00000580003 DEPDC7Q96QD5 511 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms