RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SENP6Q9GZR1 1112 aaPredicted RBP27.9■■■□□ 2.06
SHMT1-206ENST00000579558 XPNPEP3Q9NQH7 507 aa27.9■■■□□ 2.06
SHMT1-206ENST00000579558 ANTXR2P58335 489 aa27.89■■■□□ 2.06
SHMT1-206ENST00000579558 ACVR2BQ13705 512 aa27.89■■■□□ 2.06
SHMT1-206ENST00000579558 TMEM67Q5HYA8 995 aa27.89■■■□□ 2.06
SHMT1-206ENST00000579558 CREB3L3Q68CJ9 461 aa27.89■■■□□ 2.06
SHMT1-206ENST00000579558 C7orf61Q8IZ16 206 aa27.89■■■□□ 2.06
SHMT1-206ENST00000579558 CLEC4DQ8WXI8 215 aa27.89■■■□□ 2.06
SHMT1-206ENST00000579558 ABHD16BQ9H3Z7 469 aa27.89■■■□□ 2.06
SHMT1-206ENST00000579558 FAM184BQ9ULE4 1060 aa27.89■■■□□ 2.06
SHMT1-206ENST00000579558 ASB14A6NK59 587 aa27.88■■■□□ 2.05
SHMT1-206ENST00000579558 BAATQ14032 418 aaPredicted RBP27.88■■■□□ 2.05
SHMT1-206ENST00000579558 NECTIN1Q15223 517 aa27.88■■■□□ 2.05
SHMT1-206ENST00000579558 LRRC41Q15345 812 aa27.88■■■□□ 2.05
SHMT1-206ENST00000579558 USH1GQ495M9 461 aa27.88■■■□□ 2.05
SHMT1-206ENST00000579558 STAG2Q8N3U4 1231 aa27.88■■■□□ 2.05
SHMT1-206ENST00000579558 LENG1Q96BZ8 264 aaPredicted RBP27.88■■■□□ 2.05
SHMT1-206ENST00000579558 SENP2Q9HC62 589 aa27.88■■■□□ 2.05
SHMT1-206ENST00000579558 LCTP09848 1927 aa27.88■■■□□ 2.05
SHMT1-206ENST00000579558 CEP290O15078 2479 aa27.87■■■□□ 2.05
SHMT1-206ENST00000579558 PTPDC1A2A3K4 754 aa27.87■■■□□ 2.05
SHMT1-206ENST00000579558 VAT1LQ9HCJ6 419 aa27.87■■■□□ 2.05
SHMT1-206ENST00000579558 KLRF2D3W0D1 207 aa27.86■■■□□ 2.05
SHMT1-206ENST00000579558 PGK1P00558 417 aa27.86■■■□□ 2.05
SHMT1-206ENST00000579558 CENPBP07199 599 aaPredicted RBP27.86■■■□□ 2.05
SHMT1-206ENST00000579558 LRRC26Q2I0M4 334 aa27.86■■■□□ 2.05
SHMT1-206ENST00000579558 PURBQ96QR8 312 aaKnown RBP27.86■■■□□ 2.05
SHMT1-206ENST00000579558 JMJD4Q9H9V9 463 aa27.86■■■□□ 2.05
SHMT1-206ENST00000579558 MAD2L2Q9UI95 211 aa27.86■■■□□ 2.05
SHMT1-206ENST00000579558 ASTN1O14525 1302 aa27.86■■■□□ 2.05
SHMT1-206ENST00000579558 MYH6P13533 1939 aa27.85■■■□□ 2.05
SHMT1-206ENST00000579558 GRM4Q14833 912 aa27.85■■■□□ 2.05
SHMT1-206ENST00000579558 QRICH1Q2TAL8 776 aa27.85■■■□□ 2.05
SHMT1-206ENST00000579558 SLC30A10Q6XR72 485 aa27.85■■■□□ 2.05
SHMT1-206ENST00000579558 RNF207Q6ZRF8 634 aa27.85■■■□□ 2.05
SHMT1-206ENST00000579558 RNF180Q86T96 592 aa27.85■■■□□ 2.05
SHMT1-206ENST00000579558 IGDCC4Q8TDY8 1250 aa27.85■■■□□ 2.05
SHMT1-206ENST00000579558 ADD3Q9UEY8 706 aaKnown RBP27.85■■■□□ 2.05
SHMT1-206ENST00000579558 PALM3A6NDB9 673 aaPredicted RBP27.84■■■□□ 2.05
SHMT1-206ENST00000579558 PRC1O43663 620 aa27.84■■■□□ 2.05
SHMT1-206ENST00000579558 CALML3P27482 149 aa27.84■■■□□ 2.05
SHMT1-206ENST00000579558 CCDC144BQ3MJ40 725 aa27.84■■■□□ 2.05
SHMT1-206ENST00000579558 RNF20Q5VTR2 975 aa27.84■■■□□ 2.05
SHMT1-206ENST00000579558 CATIPQ7Z7H3 387 aa27.84■■■□□ 2.05
SHMT1-206ENST00000579558 KATNBL1Q9H079 304 aa27.84■■■□□ 2.05
SHMT1-206ENST00000579558 ABCB11O95342 1321 aa27.84■■■□□ 2.05
SHMT1-206ENST00000579558 MCM5P33992 734 aa27.83■■■□□ 2.05
SHMT1-206ENST00000579558 ATN1P54259 1190 aaPredicted RBP27.83■■■□□ 2.05
SHMT1-206ENST00000579558 FBXO11Q86XK2 927 aa27.83■■■□□ 2.05
SHMT1-206ENST00000579558 MTA3Q9BTC8 594 aa27.83■■■□□ 2.05
SHMT1-206ENST00000579558 DDX49Q9Y6V7 483 aaKnown RBP27.83■■■□□ 2.05
SHMT1-206ENST00000579558 LRRC37A2A6NM11 1700 aa27.83■■■□□ 2.05
SHMT1-206ENST00000579558 DUSP11O75319 330 aaKnown RBP27.82■■■□□ 2.04
SHMT1-206ENST00000579558 ADCYAP1R1P41586 468 aa27.82■■■□□ 2.04
SHMT1-206ENST00000579558 ALDH5A1P51649 535 aaPredicted RBP27.82■■■□□ 2.04
SHMT1-206ENST00000579558 RPS6P62753 249 aaKnown RBP27.82■■■□□ 2.04
SHMT1-206ENST00000579558 TROAPQ12815 778 aa27.82■■■□□ 2.04
SHMT1-206ENST00000579558 CHRDL2Q6WN34 429 aa27.82■■■□□ 2.04
SHMT1-206ENST00000579558 LY9Q9HBG7 655 aa27.82■■■□□ 2.04
SHMT1-206ENST00000579558 PPP4R2Q9NY27 417 aa27.82■■■□□ 2.04
SHMT1-206ENST00000579558 ZMYND8Q9ULU4 1186 aaPredicted RBP27.82■■■□□ 2.04
SHMT1-206ENST00000579558 COLQQ9Y215 455 aaPredicted RBP27.82■■■□□ 2.04
SHMT1-206ENST00000579558 SYNRGQ9UMZ2 1314 aa27.82■■■□□ 2.04
SHMT1-206ENST00000579558 ADAMTS4O75173 837 aa27.81■■■□□ 2.04
SHMT1-206ENST00000579558 TMEM87BQ96K49 555 aa27.81■■■□□ 2.04
SHMT1-206ENST00000579558 GPHNQ9NQX3 736 aaPredicted RBP27.81■■■□□ 2.04
SHMT1-206ENST00000579558 ADCY6O43306 1168 aa27.8■■■□□ 2.04
SHMT1-206ENST00000579558 ERICH6BQ5W0A0 696 aa27.8■■■□□ 2.04
SHMT1-206ENST00000579558 EEPD1Q7L9B9 569 aa27.8■■■□□ 2.04
SHMT1-206ENST00000579558 RGS22Q8NE09 1264 aa27.8■■■□□ 2.04
SHMT1-206ENST00000579558 MORC4Q8TE76 937 aa27.8■■■□□ 2.04
SHMT1-206ENST00000579558 NUP133Q8WUM0 1156 aa27.8■■■□□ 2.04
SHMT1-206ENST00000579558 FERMT2Q96AC1 680 aa27.8■■■□□ 2.04
SHMT1-206ENST00000579558 PHF24Q9UPV7 400 aa27.8■■■□□ 2.04
SHMT1-206ENST00000579558 LOC102724159A0A0B4J2E5 919 aa27.79■■■□□ 2.04
SHMT1-206ENST00000579558 SH2B2O14492 632 aaPredicted RBP27.79■■■□□ 2.04
SHMT1-206ENST00000579558 COL9A3Q14050 684 aaPredicted RBP27.79■■■□□ 2.04
SHMT1-206ENST00000579558 PWP2Q15269 919 aaKnown RBP27.79■■■□□ 2.04
SHMT1-206ENST00000579558 NFXL1Q6ZNB6 911 aa27.79■■■□□ 2.04
SHMT1-206ENST00000579558 FBXO16Q8IX29 292 aaPredicted RBP27.79■■■□□ 2.04
SHMT1-206ENST00000579558 ZNF654Q8IZM8 581 aa27.79■■■□□ 2.04
SHMT1-206ENST00000579558 MTMR8Q96EF0 704 aa27.79■■■□□ 2.04
SHMT1-206ENST00000579558 AMNQ9BXJ7 453 aa27.79■■■□□ 2.04
SHMT1-206ENST00000579558 MRPL11Q9Y3B7 192 aaKnown RBP27.79■■■□□ 2.04
SHMT1-206ENST00000579558 ZBTB5O15062 677 aa27.78■■■□□ 2.04
SHMT1-206ENST00000579558 DDAH1O94760 285 aa27.78■■■□□ 2.04
SHMT1-206ENST00000579558 SYN1P17600 705 aa27.78■■■□□ 2.04
SHMT1-206ENST00000579558 TNFAIP2Q03169 654 aa27.78■■■□□ 2.04
SHMT1-206ENST00000579558 HABP4Q5JVS0 413 aaKnown RBP27.78■■■□□ 2.04
SHMT1-206ENST00000579558 SLC39A5Q6ZMH5 540 aa27.78■■■□□ 2.04
SHMT1-206ENST00000579558 NOL8Q76FK4 1167 aaKnown RBP27.78■■■□□ 2.04
SHMT1-206ENST00000579558 TMTC2Q8N394 836 aa27.78■■■□□ 2.04
SHMT1-206ENST00000579558 SPC25Q9HBM1 224 aa27.78■■■□□ 2.04
SHMT1-206ENST00000579558 VTA1Q9NP79 307 aa27.78■■■□□ 2.04
SHMT1-206ENST00000579558 C11orf97A0A1B0GVM6 126 aaPredicted RBP27.77■■■□□ 2.04
SHMT1-206ENST00000579558 CCDC69A6NI79 296 aa27.77■■■□□ 2.04
SHMT1-206ENST00000579558 C6orf222P0C671 652 aaPredicted RBP27.77■■■□□ 2.04
SHMT1-206ENST00000579558 RTP1P59025 263 aa27.77■■■□□ 2.04
SHMT1-206ENST00000579558 SLC35G1Q2M3R5 365 aa27.77■■■□□ 2.04
SHMT1-206ENST00000579558 HOMER1Q86YM7 354 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms