RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 MCCP23508 829 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 OAZ1P54368 228 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 TRIM32Q13049 653 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 CCL14Q16627 93 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 IQCA1Q86XH1 822 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 TBC1D10CQ8IV04 446 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 CPXCR1Q8N123 301 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 DCAF4Q8WV16 495 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 DPF3Q92784 378 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 KRT23Q9C075 422 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 IL17RBQ9NRM6 502 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 TCP11L1Q9NUJ3 509 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 KIAA1468Q9P260 1216 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 ZNF214Q9UL59 606 aaPredicted RBP9.53□□□□□ -0.88
VPS53-214ENST00000572607 DNAH12Q6ZR08 3092 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 GREB1LQ9C091 1923 aaPredicted RBP9.52□□□□□ -0.88
VPS53-214ENST00000572607 VCANP13611 3396 aa9.52□□□□□ -0.88
VPS53-214ENST00000572607 A0A0G2JMZ2 1700 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 SOWAHBA6NEL2 793 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 DPYSL4O14531 572 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 NMT2O60551 498 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 MSCO60682 206 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 CHMLP26374 656 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 CNGA1P29973 690 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 CACNB2Q08289 660 aaPredicted RBP9.52□□□□□ -0.89
VPS53-214ENST00000572607 TRDNQ13061 729 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 MAP3K21Q5TCX8 1036 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 OLFML2BQ68BL8 750 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 RCSD1Q6JBY9 416 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 KIAA1211Q6ZU35 1233 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 KCTD1Q719H9 257 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 ANKLE1Q8NAG6 615 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 SLC17A8Q8NDX2 589 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 REPS2Q8NFH8 660 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 CHMP4CQ96CF2 233 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 DDX11Q96FC9 970 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 TTC14Q96N46 770 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 TMEM47Q9BQJ4 181 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 CNNM2Q9H8M5 875 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 SLC38A10Q9HBR0 1119 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 FBXO40Q9UH90 709 aa9.52□□□□□ -0.89
VPS53-214ENST00000572607 A0A1W2PPC1 479 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 ATP2A1O14983 1001 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 KDM4AO75164 1064 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 CYP2C19P33261 490 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 CASC1Q6TDU7 716 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 NECAB2Q7Z6G3 386 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 DGKHQ86XP1 1220 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 ANKRD35Q8N283 1001 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 CHST13Q8NET6 341 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 NPLOC4Q8TAT6 608 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 CCDC136Q96JN2 1154 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 ZFRQ96KR1 1074 aaKnown RBP9.51□□□□□ -0.89
VPS53-214ENST00000572607 GDF15Q99988 308 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 UBAC1Q9BSL1 405 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 KAT14Q9H8E8 782 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 RAVER2Q9HCJ3 691 aaKnown RBP9.51□□□□□ -0.89
VPS53-214ENST00000572607 TACC3Q9Y6A5 838 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 FRMPD3Q5JV73 1810 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 NEDD4P46934 1319 aa9.51□□□□□ -0.89
VPS53-214ENST00000572607 PRUNE2Q8WUY3 3088 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 PLA2G6O60733 806 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 COBLO75128 1261 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 PGK2P07205 417 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 CCND3P30281 292 aaPredicted RBP9.5□□□□□ -0.89
VPS53-214ENST00000572607 NOVP48745 357 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 TKFCQ3LXA3 575 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 NYAP1Q6ZVC0 841 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 RALYLQ86SE5 291 aaKnown RBP9.5□□□□□ -0.89
VPS53-214ENST00000572607 DIS3LQ8TF46 1054 aaKnown RBP9.5□□□□□ -0.89
VPS53-214ENST00000572607 MAML3Q96JK9 1138 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 ZSCAN10Q96SZ4 725 aaPredicted RBP9.5□□□□□ -0.89
VPS53-214ENST00000572607 ZKSCAN3Q9BRR0 538 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 ACAD9Q9H845 621 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 GPCPD1Q9NPB8 672 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 FLRT1Q9NZU1 646 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 DDX20Q9UHI6 824 aaKnown RBP9.5□□□□□ -0.89
VPS53-214ENST00000572607 PNMA2Q9UL42 364 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 PRR12Q9ULL5 1215 aa9.5□□□□□ -0.89
VPS53-214ENST00000572607 DIS3Q9Y2L1 958 aaKnown RBP9.5□□□□□ -0.89
VPS53-214ENST00000572607 FRMPD2Q68DX3 1309 aaPredicted RBP9.5□□□□□ -0.89
VPS53-214ENST00000572607 ERICH2A1L162 156 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 B4E1Z4 1266 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 SGSM2O43147 1006 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 GPATCH4Q5T3I0 446 aaKnown RBP9.49□□□□□ -0.89
VPS53-214ENST00000572607 SYDE2Q5VT97 1194 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 CCDC174Q6PII3 467 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 BBXQ8WY36 941 aaPredicted RBP9.49□□□□□ -0.89
VPS53-214ENST00000572607 PAWRQ96IZ0 340 aaKnown RBP9.49□□□□□ -0.89
VPS53-214ENST00000572607 C11orf49Q9H6J7 331 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 HOMER2Q9NSB8 354 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 RNF146Q9NTX7 359 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 NRBP1Q9UHY1 535 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 OGDHLQ9ULD0 1010 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 CNPY2Q9Y2B0 182 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 NR2E3Q9Y5X4 410 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 TNKSO95271 1327 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 ZNF236Q9UL36 1845 aa9.49□□□□□ -0.89
VPS53-214ENST00000572607 PDHBP11177 359 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 ALAS1P13196 640 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms