RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 CCDC148Q8NFR7 591 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 CCDC12Q8WUD4 166 aaPredicted RBP7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 PIBF1Q8WXW3 757 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 PHKBQ93100 1093 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 KIFC2Q96AC6 838 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 SLF1Q9BQI6 1058 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 CWC22Q9HCG8 908 aaKnown RBP7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 BRMS1Q9HCU9 246 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 RABGEF1Q9UJ41 708 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 PNMA3Q9UL41 463 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 AGTPBP1Q9UPW5 1226 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 KCNH4Q9UQ05 1017 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 VPS9D1Q9Y2B5 631 aa7.61□□□□□ -1.19
CTDNEP1-204ENST00000570484 ATAD5Q96QE3 1844 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 VPS37CA5D8V6 355 aaPredicted RBP7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 PALM3A6NDB9 673 aaPredicted RBP7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 USP17L15C9J2P7 530 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 USP17L13C9JLJ4 530 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 USP17L11C9JVI0 530 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 USP17L18D6R9N7 530 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 USP17L22D6RA61 530 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 USP17L17D6RBQ6 530 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 USP17L19D6RCP7 530 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 USP17L20D6RJB6 530 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 hCG_1984214I3L0E3 225 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 JAK2O60674 1132 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 PPFIA3O75145 1194 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 SLC10A3P09131 477 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 SMARCA1P28370 1054 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 SLC16A2P36021 539 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 APLP1P51693 650 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 PDE4DQ08499 809 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 USP17L24Q0WX57 530 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 ST3GAL1Q11201 340 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 SREBF2Q12772 1141 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 DGKZQ13574 1117 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 SH3D19Q5HYK7 790 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 SPRYD7Q5W111 196 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 PACS2Q86VP3 889 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 ZNF713Q8N859 430 aaPredicted RBP7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 SMCR8Q8TEV9 937 aaPredicted RBP7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 TATDN2Q93075 761 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 HHIPL1Q96JK4 782 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 ALG1Q9BT22 464 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 UBA5Q9GZZ9 404 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 VAT1LQ9HCJ6 419 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 PNMA2Q9UL42 364 aa7.6□□□□□ -1.19
CTDNEP1-204ENST00000570484 MYPNQ86TC9 1320 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 MANSC4A6NHS7 340 aaPredicted RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 ZBTB5O15062 677 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 PRPF3O43395 683 aaKnown RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 HRO43593 1189 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 PLA2G6O60733 806 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 ZBED4O75132 1171 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 FDX1P10109 184 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 SCG2P13521 617 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 PDIA4P13667 645 aaKnown RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 NAPAP54920 295 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 LSM11P83369 360 aaKnown RBP eCLIP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 SAFBQ15424 915 aaKnown RBP eCLIP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 LARP1BQ659C4 914 aaKnown RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 OTUD7BQ6GQQ9 843 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 TTBK2Q6IQ55 1244 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 PPP1R18Q6NYC8 613 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 CCDC174Q6PII3 467 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 ADGRF4Q8IZF3 695 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 SRBD1Q8N5C6 995 aaKnown RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 PRPF38AQ8NAV1 312 aaKnown RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 SMARCC2Q8TAQ2 1214 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 GTF3C2Q8WUA4 911 aaPredicted RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 C8orf76Q96K31 380 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 PIGSQ96S52 555 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 PARK7Q99497 189 aaKnown RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 CPVLQ9H3G5 476 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 FAM217BQ9NTX9 383 aaPredicted RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 PPP1R9AQ9ULJ8 1098 aa7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 V9GY48 417 aaPredicted RBP7.59□□□□□ -1.19
CTDNEP1-204ENST00000570484 PNMA6FA0A0J9YX94 578 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 hCG_1642624A0A1W2PR95 340 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 CTDNEP1O95476 244 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 GJA5P36382 358 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 NOGQ13253 232 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 PLS1Q14651 629 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 NTRK3Q16288 839 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 PFKFB3Q16875 520 aaPredicted RBP7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 USH1GQ495M9 461 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 KIAA1755Q5JYT7 1200 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 TREML2Q5T2D2 321 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 BTNL9Q6UXG8 535 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 ANKRD23Q86SG2 305 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 FBXO11Q86XK2 927 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 MB21D1Q8N884 522 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 GPKOWQ92917 476 aaPredicted RBP eCLIP7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 AMNQ9BXJ7 453 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 KRTAP3-3Q9BYR6 98 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 KRTAP3-2Q9BYR7 98 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 RIOX1Q9H6W3 641 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 JMJD4Q9H9V9 463 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 FBXO28Q9NVF7 368 aa7.58□□□□□ -1.2
CTDNEP1-204ENST00000570484 HOXC10Q9NYD6 342 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms