RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CCDC192P0DO97 292 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 BMP3P12645 472 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 USP14P54578 494 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 NAPAP54920 295 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 SEPT2Q15019 361 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 ZRSR1Q15695 479 aaKnown RBP9.1□□□□□ -0.95
VPS39-213ENST00000570062 CCDC96Q2M329 555 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 UVSSAQ2YD98 709 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 BTNL9Q6UXG8 535 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 HEATR3Q7Z4Q2 680 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 CCAR1Q8IX12 1150 aaKnown RBP9.1□□□□□ -0.95
VPS39-213ENST00000570062 CMTR1Q8N1G2 835 aaKnown RBP9.1□□□□□ -0.95
VPS39-213ENST00000570062 STAG2Q8N3U4 1231 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 NLGN2Q8NFZ4 835 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 MTMR8Q96EF0 704 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 AIFM3Q96NN9 605 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 ZNF341Q9BYN7 854 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 MAF1Q9H063 256 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 DEFB129Q9H1M3 183 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 TNMDQ9H2S6 317 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 DNAJC18Q9H819 358 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 ADARB2Q9NS39 739 aaKnown RBP9.1□□□□□ -0.95
VPS39-213ENST00000570062 TMEM63CQ9P1W3 806 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 PCDHA7Q9UN72 937 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 KCNJ14Q9UNX9 436 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 SRPRBQ9Y5M8 271 aaKnown RBP9.1□□□□□ -0.95
VPS39-213ENST00000570062 DDX60LQ5H9U9 1706 aaKnown RBP9.1□□□□□ -0.95
VPS39-213ENST00000570062 CNTNAP1P78357 1384 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 SMCO2A6NFE2 343 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 KIF28PB7ZC32 967 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 STXBP3O00186 592 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 CYTH3O43739 400 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 FOSP01100 380 aaPredicted RBP9.09□□□□□ -0.95
VPS39-213ENST00000570062 DEKP35659 375 aaKnown RBP9.09□□□□□ -0.95
VPS39-213ENST00000570062 RASSF7Q02833 373 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 CEBPZQ03701 1054 aaKnown RBP9.09□□□□□ -0.95
VPS39-213ENST00000570062 NONOQ15233 471 aaKnown RBP eCLIP9.09□□□□□ -0.95
VPS39-213ENST00000570062 NBPF9Q3BBW0 867 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 SASS6Q6UVJ0 657 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 LRRC47Q8N1G4 583 aaKnown RBP9.09□□□□□ -0.95
VPS39-213ENST00000570062 SAMD3Q8N6K7 520 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 ZC3H15Q8WU90 426 aaKnown RBP9.09□□□□□ -0.95
VPS39-213ENST00000570062 PGBD1Q96JS3 809 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 AMNQ9BXJ7 453 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 PRKD2Q9BZL6 878 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 TSPY26PQ9H489 355 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 CLSTN2Q9H4D0 955 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 DACT1Q9NYF0 836 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 HACL1Q9UJ83 578 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 FEM1BQ9UK73 627 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 ZBTB21Q9ULJ3 1066 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 PCDHAC2Q9Y5I4 1007 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 CLIC4Q9Y696 253 aa9.09□□□□□ -0.95
VPS39-213ENST00000570062 BAZ2AQ9UIF9 1905 aaKnown RBP9.08□□□□□ -0.96
VPS39-213ENST00000570062 PPFIA3O75145 1194 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 GOLGA8HP0CJ92 632 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 GCFC2P16383 781 aaKnown RBP9.08□□□□□ -0.96
VPS39-213ENST00000570062 TXLNAP40222 546 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 ADCY7P51828 1080 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 STAT2P52630 851 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 SEMA3FQ13275 785 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 AP3B2Q13367 1082 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 PTPAQ15257 358 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 TTC38Q5R3I4 469 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 WWC2Q6AWC2 1192 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 RBM43Q6ZSC3 357 aaKnown RBP9.08□□□□□ -0.96
VPS39-213ENST00000570062 ADGRF4Q8IZF3 695 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 REXO1Q8N1G1 1221 aaKnown RBP9.08□□□□□ -0.96
VPS39-213ENST00000570062 FSIP1Q8NA03 581 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 CUL5Q93034 780 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 TNFRSF25Q93038 417 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 PIGSQ96S52 555 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 SDF4Q9BRK5 362 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 RAB34Q9BZG1 259 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 TMEM39BQ9GZU3 492 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 NAT10Q9H0A0 1025 aaKnown RBP9.08□□□□□ -0.96
VPS39-213ENST00000570062 VCPKMTQ9H867 229 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 JMJD4Q9H9V9 463 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 GRPEL1Q9HAV7 217 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 VAT1LQ9HCJ6 419 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 RIC8AQ9NPQ8 531 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 PGAP2Q9UHJ9 254 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 RABGAP1Q9Y3P9 1069 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 PSME4Q14997 1843 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 FOCADQ5VW36 1801 aa9.08□□□□□ -0.96
VPS39-213ENST00000570062 FER1L6Q2WGJ9 1857 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 IQCA1LA6NCM1 817 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 UNCXA6NJT0 531 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 C19orf81C9J6K1 198 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 M0R2N6 131 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 SLC26A4O43511 780 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 GDF11O95390 407 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 NDUFB10O96000 172 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 LONP1P36776 959 aaKnown RBP9.07□□□□□ -0.96
VPS39-213ENST00000570062 PRPHP41219 470 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 SYKP43405 635 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 IKQ13123 557 aaPredicted RBP9.07□□□□□ -0.96
VPS39-213ENST00000570062 NR5A1Q13285 461 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 GPR162Q16538 588 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 TBC1D10BQ4KMP7 808 aaPredicted RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms