RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 TMX2Q9Y320 296 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 RFXAPO00287 272 aa13.4□□□□□ -0.26
CLN3-226ENST00000567160 SNAI1O95863 264 aaPredicted RBP13.4□□□□□ -0.26
CLN3-226ENST00000567160 ALADP13716 330 aa13.4□□□□□ -0.26
CLN3-226ENST00000567160 ICA1Q05084 483 aa13.4□□□□□ -0.26
CLN3-226ENST00000567160 MCMDC2Q4G0Z9 681 aa13.4□□□□□ -0.26
CLN3-226ENST00000567160 KIAA1755Q5JYT7 1200 aa13.4□□□□□ -0.26
CLN3-226ENST00000567160 ZNF467Q7Z7K2 595 aaPredicted RBP13.4□□□□□ -0.26
CLN3-226ENST00000567160 ESYT1Q9BSJ8 1104 aa13.4□□□□□ -0.26
CLN3-226ENST00000567160 IL25Q9H293 177 aa13.4□□□□□ -0.26
CLN3-226ENST00000567160 LAMA4Q16363 1823 aa13.4□□□□□ -0.26
CLN3-226ENST00000567160 BRWD1Q9NSI6 2320 aa13.4□□□□□ -0.26
CLN3-226ENST00000567160 MCM3APO60318 1980 aa13.4□□□□□ -0.27
CLN3-226ENST00000567160 VWA5AO00534 786 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 GPAA1O43292 621 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 ACTN1P12814 892 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 NHLH1Q02575 133 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 CCDC144BQ3MJ40 725 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 ZNF589Q86UQ0 364 aaPredicted RBP13.39□□□□□ -0.27
CLN3-226ENST00000567160 ARNTL2Q8WYA1 636 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 RIOK1Q9BRS2 568 aaKnown RBP13.39□□□□□ -0.27
CLN3-226ENST00000567160 NOC4LQ9BVI4 516 aaKnown RBP13.39□□□□□ -0.27
CLN3-226ENST00000567160 CERS4Q9HA82 394 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.39□□□□□ -0.27
CLN3-226ENST00000567160 SWAP70Q9UH65 585 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 ZNF214Q9UL59 606 aaPredicted RBP13.39□□□□□ -0.27
CLN3-226ENST00000567160 UMODL1Q5DID0 1318 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 CCDC171Q6TFL3 1326 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 RAD50Q92878 1312 aa13.39□□□□□ -0.27
CLN3-226ENST00000567160 KIF28PB7ZC32 967 aa13.38□□□□□ -0.27
CLN3-226ENST00000567160 SGSM2O43147 1006 aa13.38□□□□□ -0.27
CLN3-226ENST00000567160 ZEB2O60315 1214 aa13.38□□□□□ -0.27
CLN3-226ENST00000567160 ITGA7Q13683 1181 aa13.38□□□□□ -0.27
CLN3-226ENST00000567160 SLC43A3Q8NBI5 491 aa13.38□□□□□ -0.27
CLN3-226ENST00000567160 STRBPQ96SI9 672 aaKnown RBP13.38□□□□□ -0.27
CLN3-226ENST00000567160 SLC9A7Q96T83 725 aa13.38□□□□□ -0.27
CLN3-226ENST00000567160 TEX13BQ9BXU2 312 aa13.38□□□□□ -0.27
CLN3-226ENST00000567160 CRNKL1Q9BZJ0 848 aaKnown RBP13.38□□□□□ -0.27
CLN3-226ENST00000567160 MCM9Q9NXL9 1143 aa13.38□□□□□ -0.27
CLN3-226ENST00000567160 PPP1R9AQ9ULJ8 1098 aa13.38□□□□□ -0.27
CLN3-226ENST00000567160 PRKAB2O43741 272 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 SSTR3P32745 418 aaPredicted RBP13.37□□□□□ -0.27
CLN3-226ENST00000567160 MFAP1P55081 439 aaKnown RBP13.37□□□□□ -0.27
CLN3-226ENST00000567160 NKX3-2P78367 333 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 IRX5P78411 483 aaPredicted RBP13.37□□□□□ -0.27
CLN3-226ENST00000567160 C8orf34Q49A92 452 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 VPS53Q5VIR6 699 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 KRT40Q6A162 431 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 GJD3Q8N144 294 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 PHOSPHO2Q8TCD6 241 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 WNT8AQ9H1J5 351 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 GOPCQ9HD26 462 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 FBXO28Q9NVF7 368 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 SLC4A4Q9Y6R1 1079 aa13.37□□□□□ -0.27
CLN3-226ENST00000567160 DNAJC25-GNG10A0A024R161 153 aa13.36□□□□□ -0.27
CLN3-226ENST00000567160 EPOPA6NHQ4 379 aa13.36□□□□□ -0.27
CLN3-226ENST00000567160 ADCY6O43306 1168 aa13.36□□□□□ -0.27
CLN3-226ENST00000567160 APPP05067 770 aa13.36□□□□□ -0.27
CLN3-226ENST00000567160 SNRNP48Q6IEG0 339 aaKnown RBP13.36□□□□□ -0.27
CLN3-226ENST00000567160 CXCL17Q6UXB2 119 aa13.36□□□□□ -0.27
CLN3-226ENST00000567160 NOL8Q76FK4 1167 aaKnown RBP13.36□□□□□ -0.27
CLN3-226ENST00000567160 SDR42E1Q8WUS8 393 aa13.36□□□□□ -0.27
CLN3-226ENST00000567160 CCDC17Q96LX7 622 aa13.36□□□□□ -0.27
CLN3-226ENST00000567160 CD320Q9NPF0 282 aa13.36□□□□□ -0.27
CLN3-226ENST00000567160 LMCD1Q9NZU5 365 aa13.36□□□□□ -0.27
CLN3-226ENST00000567160 RAD21O60216 631 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 B4GALT4O60513 344 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 SUPT20HL2P0C7V6 817 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 BEX3Q00994 111 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 TAP1Q03518 808 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 GRB10Q13322 594 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 TTLL4Q14679 1199 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 KIAA1211Q6ZU35 1233 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 ARMCX2Q7L311 632 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 SIAH1Q8IUQ4 282 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 FAM178BQ8IXR5 827 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 REPS2Q8NFH8 660 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 SCLYQ96I15 445 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 FBXL18Q96ME1 805 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 AP5M1Q9H0R1 490 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 TRPV6Q9H1D0 765 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 ANO2Q9NQ90 1003 aa13.35□□□□□ -0.27
CLN3-226ENST00000567160 CTDP1Q9Y5B0 961 aaPredicted RBP13.35□□□□□ -0.27
CLN3-226ENST00000567160 COL4A4P53420 1690 aaPredicted RBP13.34□□□□□ -0.27
CLN3-226ENST00000567160 CTAGE5O15320 804 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 HSPD1P10809 573 aaKnown RBP13.34□□□□□ -0.27
CLN3-226ENST00000567160 AKR1B1P15121 316 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 GNAT2P19087 354 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 RFC2P35250 354 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 TNFAIP2Q03169 654 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 PTH1RQ03431 593 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 FSCN1Q16658 493 aaKnown RBP13.34□□□□□ -0.27
CLN3-226ENST00000567160 CLEC10AQ8IUN9 316 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 ANKRD35Q8N283 1001 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 AGBL1Q96MI9 1066 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 SLF1Q9BQI6 1058 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 FBXO40Q9UH90 709 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 ZNF536O15090 1300 aa13.34□□□□□ -0.27
CLN3-226ENST00000567160 GSG1L2A8MUP6 293 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 PATL2C9JE40 543 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms