RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TRIB2Q92519 343 aa22.72■■□□□ 1.23
CLN3-225ENST00000566824 GRK4P32298 578 aa22.71■■□□□ 1.23
CLN3-225ENST00000566824 RGS2P41220 211 aa22.71■■□□□ 1.23
CLN3-225ENST00000566824 AK2P54819 239 aa22.71■■□□□ 1.23
CLN3-225ENST00000566824 TKFCQ3LXA3 575 aa22.71■■□□□ 1.23
CLN3-225ENST00000566824 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLN3-225ENST00000566824 SPZ1Q9BXG8 430 aa22.71■■□□□ 1.23
CLN3-225ENST00000566824 ACAD9Q9H845 621 aa22.71■■□□□ 1.23
CLN3-225ENST00000566824 NCOA5Q9HCD5 579 aaKnown RBP22.71■■□□□ 1.23
CLN3-225ENST00000566824 A1CFQ9NQ94 594 aaKnown RBP22.71■■□□□ 1.23
CLN3-225ENST00000566824 ZBTB5O15062 677 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 MYCP01106 439 aaPredicted RBP22.7■■□□□ 1.22
CLN3-225ENST00000566824 HOXC6P09630 235 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 NEK4P51957 841 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 KCTD2Q14681 263 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 SLC9C1Q4G0N8 1177 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 FBXO11Q86XK2 927 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 TBC1D5Q92609 795 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 FGD4Q96M96 766 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 PURBQ96QR8 312 aaKnown RBP22.7■■□□□ 1.22
CLN3-225ENST00000566824 APBA2Q99767 749 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 ALDH8A1Q9H2A2 487 aaPredicted RBP22.7■■□□□ 1.22
CLN3-225ENST00000566824 RBBP6Q7Z6E9 1792 aaKnown RBP22.7■■□□□ 1.22
CLN3-225ENST00000566824 MCM3APO60318 1980 aa22.7■■□□□ 1.22
CLN3-225ENST00000566824 NID2Q14112 1375 aa22.69■■□□□ 1.22
CLN3-225ENST00000566824 DNAJC25-GNG10A0A024R161 153 aa22.69■■□□□ 1.22
CLN3-225ENST00000566824 XRCC5P13010 732 aaKnown RBP22.69■■□□□ 1.22
CLN3-225ENST00000566824 METAP2P50579 478 aaKnown RBP eCLIP22.69■■□□□ 1.22
CLN3-225ENST00000566824 CCT2P78371 535 aaKnown RBP22.69■■□□□ 1.22
CLN3-225ENST00000566824 CNTN2Q02246 1040 aa22.69■■□□□ 1.22
CLN3-225ENST00000566824 ZNF792Q3KQV3 632 aa22.69■■□□□ 1.22
CLN3-225ENST00000566824 DPP9Q86TI2 863 aa22.69■■□□□ 1.22
CLN3-225ENST00000566824 ANKRD35Q8N283 1001 aa22.69■■□□□ 1.22
CLN3-225ENST00000566824 FBXO40Q9UH90 709 aa22.69■■□□□ 1.22
CLN3-225ENST00000566824 TPCN1Q9ULQ1 816 aa22.69■■□□□ 1.22
CLN3-225ENST00000566824 CNTNAP5Q8WYK1 1306 aa22.69■■□□□ 1.22
CLN3-225ENST00000566824 PNMA6FA0A0J9YX94 578 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 OPLAHO14841 1288 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 DTNBO60941 627 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 PPFIA3O75145 1194 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 IGHA2P01877 340 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 SMARCA1P28370 1054 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 GNAQP50148 359 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 NSMFQ6X4W1 530 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 NOL8Q76FK4 1167 aaKnown RBP22.68■■□□□ 1.22
CLN3-225ENST00000566824 SLAIN1Q8ND83 568 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 PXYLP1Q8TE99 480 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 ARMC5Q96C12 935 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 LZTS2Q9BRK4 669 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 CYP39A1Q9NYL5 469 aa22.68■■□□□ 1.22
CLN3-225ENST00000566824 INHAP05111 366 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 RCAN1P53805 252 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 STK3Q13188 491 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 MTFR1Q15390 333 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 SLC30A10Q6XR72 485 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 DDX11Q96FC9 970 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 ZNF333Q96JL9 665 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 TBC1D32Q96NH3 1257 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 AMNQ9BXJ7 453 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 RBM28Q9NW13 759 aaKnown RBP22.67■■□□□ 1.22
CLN3-225ENST00000566824 DDX49Q9Y6V7 483 aaKnown RBP22.67■■□□□ 1.22
CLN3-225ENST00000566824 ASTN1O14525 1302 aa22.67■■□□□ 1.22
CLN3-225ENST00000566824 LARGE1O95461 756 aa22.66■■□□□ 1.22
CLN3-225ENST00000566824 BAATQ14032 418 aaPredicted RBP22.66■■□□□ 1.22
CLN3-225ENST00000566824 RRP36Q96EU6 259 aaKnown RBP22.66■■□□□ 1.22
CLN3-225ENST00000566824 MAML3Q96JK9 1138 aa22.66■■□□□ 1.22
CLN3-225ENST00000566824 BIN2Q9UBW5 565 aaPredicted RBP22.66■■□□□ 1.22
CLN3-225ENST00000566824 PCDHA1Q9Y5I3 950 aa22.66■■□□□ 1.22
CLN3-225ENST00000566824 ABCB11O95342 1321 aa22.66■■□□□ 1.22
CLN3-225ENST00000566824 SOWAHBA6NEL2 793 aa22.65■■□□□ 1.22
CLN3-225ENST00000566824 CYP2C19P33261 490 aa22.65■■□□□ 1.22
CLN3-225ENST00000566824 NTRK3Q16288 839 aa22.65■■□□□ 1.22
CLN3-225ENST00000566824 FAM133AQ8N9E0 248 aa22.65■■□□□ 1.22
CLN3-225ENST00000566824 ZNF274Q96GC6 653 aaPredicted RBP22.65■■□□□ 1.22
CLN3-225ENST00000566824 HMGCRP04035 888 aa22.64■■□□□ 1.22
CLN3-225ENST00000566824 V9GY48 417 aaPredicted RBP22.64■■□□□ 1.22
CLN3-225ENST00000566824 POTEB2H3BUK9 544 aa22.63■■□□□ 1.21
CLN3-225ENST00000566824 CACNB2Q08289 660 aaPredicted RBP22.63■■□□□ 1.21
CLN3-225ENST00000566824 TRPV1Q8NER1 839 aa22.63■■□□□ 1.21
CLN3-225ENST00000566824 GPKOWQ92917 476 aaPredicted RBP eCLIP22.63■■□□□ 1.21
CLN3-225ENST00000566824 PHKBQ93100 1093 aa22.63■■□□□ 1.21
CLN3-225ENST00000566824 UNC93B1Q9H1C4 597 aa22.63■■□□□ 1.21
CLN3-225ENST00000566824 UPF2Q9HAU5 1272 aaKnown RBP22.63■■□□□ 1.21
CLN3-225ENST00000566824 COL20A1Q9P218 1284 aa22.63■■□□□ 1.21
CLN3-225ENST00000566824 PNMA2Q9UL42 364 aa22.63■■□□□ 1.21
CLN3-225ENST00000566824 KIAA0100Q14667 2235 aaKnown RBP22.63■■□□□ 1.21
CLN3-225ENST00000566824 PTPDC1A2A3K4 754 aa22.62■■□□□ 1.21
CLN3-225ENST00000566824 CALML3P27482 149 aa22.62■■□□□ 1.21
CLN3-225ENST00000566824 RPS6P62753 249 aaKnown RBP22.62■■□□□ 1.21
CLN3-225ENST00000566824 SCRN1Q12765 414 aa22.62■■□□□ 1.21
CLN3-225ENST00000566824 PRAMEF19Q5SWL8 479 aa22.62■■□□□ 1.21
CLN3-225ENST00000566824 MAP3K21Q5TCX8 1036 aa22.62■■□□□ 1.21
CLN3-225ENST00000566824 OLFML2BQ68BL8 750 aa22.62■■□□□ 1.21
CLN3-225ENST00000566824 NECAB1Q8N987 351 aa22.62■■□□□ 1.21
CLN3-225ENST00000566824 MRPL11Q9Y3B7 192 aaKnown RBP22.62■■□□□ 1.21
CLN3-225ENST00000566824 PFASO15067 1338 aa22.62■■□□□ 1.21
CLN3-225ENST00000566824 CCDC85CA6NKD9 419 aa22.61■■□□□ 1.21
CLN3-225ENST00000566824 CCL5P13501 91 aa22.61■■□□□ 1.21
CLN3-225ENST00000566824 PRKAR2AP13861 404 aaKnown RBP22.61■■□□□ 1.21
CLN3-225ENST00000566824 ME3Q16798 604 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms