RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 PNMA2Q9UL42 364 aa26.38■■□□□ 1.81
CLN3-215ENST00000565236 MOXD2PA6NHM9 499 aa26.37■■□□□ 1.81
CLN3-215ENST00000565236 B4E1Z4 1266 aa26.37■■□□□ 1.81
CLN3-215ENST00000565236 C6orf222P0C671 652 aaPredicted RBP26.37■■□□□ 1.81
CLN3-215ENST00000565236 GSPT1P15170 499 aaKnown RBP26.37■■□□□ 1.81
CLN3-215ENST00000565236 LRIT3Q3SXY7 679 aa26.37■■□□□ 1.81
CLN3-215ENST00000565236 KATNBL1Q9H079 304 aa26.37■■□□□ 1.81
CLN3-215ENST00000565236 GPATCH4Q5T3I0 446 aaKnown RBP26.36■■□□□ 1.81
CLN3-215ENST00000565236 NOL8Q76FK4 1167 aaKnown RBP26.36■■□□□ 1.81
CLN3-215ENST00000565236 PCSK9Q8NBP7 692 aaKnown RBP26.36■■□□□ 1.81
CLN3-215ENST00000565236 ZSCAN10Q96SZ4 725 aaPredicted RBP26.36■■□□□ 1.81
CLN3-215ENST00000565236 KRT23Q9C075 422 aa26.36■■□□□ 1.81
CLN3-215ENST00000565236 KAT14Q9H8E8 782 aa26.36■■□□□ 1.81
CLN3-215ENST00000565236 CNNM2Q9H8M5 875 aa26.36■■□□□ 1.81
CLN3-215ENST00000565236 STARD7Q9NQZ5 370 aa26.36■■□□□ 1.81
CLN3-215ENST00000565236 ZSWIM5Q9P217 1185 aa26.36■■□□□ 1.81
CLN3-215ENST00000565236 LAMA4Q16363 1823 aa26.36■■□□□ 1.81
CLN3-215ENST00000565236 ADCY6O43306 1168 aa26.35■■□□□ 1.81
CLN3-215ENST00000565236 GJA9P57773 515 aa26.35■■□□□ 1.81
CLN3-215ENST00000565236 TNFAIP2Q03169 654 aa26.35■■□□□ 1.81
CLN3-215ENST00000565236 BAATQ14032 418 aaPredicted RBP26.35■■□□□ 1.81
CLN3-215ENST00000565236 CCSAPQ6IQ19 270 aaPredicted RBP26.35■■□□□ 1.81
CLN3-215ENST00000565236 PNMA1Q8ND90 353 aa26.35■■□□□ 1.81
CLN3-215ENST00000565236 RUFY2Q8WXA3 655 aa26.35■■□□□ 1.81
CLN3-215ENST00000565236 PDLIM7Q9NR12 457 aa26.35■■□□□ 1.81
CLN3-215ENST00000565236 MYADML2A6NDP7 307 aa26.34■■□□□ 1.81
CLN3-215ENST00000565236 GOLGA8HP0CJ92 632 aa26.34■■□□□ 1.81
CLN3-215ENST00000565236 CST5P28325 142 aaPredicted RBP26.34■■□□□ 1.81
CLN3-215ENST00000565236 GNASQ5JWF2 1037 aa26.34■■□□□ 1.81
CLN3-215ENST00000565236 ANKS1AQ92625 1134 aa26.34■■□□□ 1.81
CLN3-215ENST00000565236 UPF3AQ9H1J1 476 aaKnown RBP26.34■■□□□ 1.81
CLN3-215ENST00000565236 IL25Q9H293 177 aa26.34■■□□□ 1.81
CLN3-215ENST00000565236 ADD3Q9UEY8 706 aaKnown RBP26.34■■□□□ 1.81
CLN3-215ENST00000565236 PTPDC1A2A3K4 754 aa26.33■■□□□ 1.81
CLN3-215ENST00000565236 NFIBO00712 420 aa26.33■■□□□ 1.81
CLN3-215ENST00000565236 PQBP1O60828 265 aaKnown RBP26.33■■□□□ 1.81
CLN3-215ENST00000565236 IRX5P78411 483 aaPredicted RBP26.33■■□□□ 1.81
CLN3-215ENST00000565236 SH3RF1Q7Z6J0 888 aa26.33■■□□□ 1.81
CLN3-215ENST00000565236 VTI1AQ96AJ9 217 aa26.33■■□□□ 1.81
CLN3-215ENST00000565236 GLT1D1Q96MS3 346 aa26.33■■□□□ 1.81
CLN3-215ENST00000565236 PURBQ96QR8 312 aaKnown RBP26.33■■□□□ 1.81
CLN3-215ENST00000565236 ASTN1O14525 1302 aa26.33■■□□□ 1.81
CLN3-215ENST00000565236 TRIM43BA6NCK2 446 aa26.32■■□□□ 1.8
CLN3-215ENST00000565236 ASGR1P07306 291 aa26.32■■□□□ 1.8
CLN3-215ENST00000565236 CLTBP09497 229 aa26.32■■□□□ 1.8
CLN3-215ENST00000565236 GPR153Q6NV75 609 aa26.32■■□□□ 1.8
CLN3-215ENST00000565236 EEPD1Q7L9B9 569 aa26.32■■□□□ 1.8
CLN3-215ENST00000565236 ENAHQ8N8S7 591 aaPredicted RBP26.32■■□□□ 1.8
CLN3-215ENST00000565236 BADQ92934 168 aa26.32■■□□□ 1.8
CLN3-215ENST00000565236 TRIM43Q96BQ3 446 aaPredicted RBP26.32■■□□□ 1.8
CLN3-215ENST00000565236 UBAC1Q9BSL1 405 aa26.32■■□□□ 1.8
CLN3-215ENST00000565236 UBA5Q9GZZ9 404 aa26.32■■□□□ 1.8
CLN3-215ENST00000565236 DDX49Q9Y6V7 483 aaKnown RBP26.32■■□□□ 1.8
CLN3-215ENST00000565236 RAD50Q92878 1312 aa26.32■■□□□ 1.8
CLN3-215ENST00000565236 C11orf97A0A1B0GVM6 126 aaPredicted RBP26.31■■□□□ 1.8
CLN3-215ENST00000565236 DCDC2CA8MYV0 355 aa26.31■■□□□ 1.8
CLN3-215ENST00000565236 CHMLP26374 656 aa26.31■■□□□ 1.8
CLN3-215ENST00000565236 IQSEC1Q6DN90 963 aa26.31■■□□□ 1.8
CLN3-215ENST00000565236 CLEC4DQ8WXI8 215 aa26.31■■□□□ 1.8
CLN3-215ENST00000565236 TOX2Q96NM4 488 aa26.31■■□□□ 1.8
CLN3-215ENST00000565236 ELP1O95163 1332 aa26.31■■□□□ 1.8
CLN3-215ENST00000565236 TNKSO95271 1327 aa26.31■■□□□ 1.8
CLN3-215ENST00000565236 WDR19Q8NEZ3 1342 aa26.31■■□□□ 1.8
CLN3-215ENST00000565236 CALML3P27482 149 aa26.3■■□□□ 1.8
CLN3-215ENST00000565236 RNF207Q6ZRF8 634 aa26.3■■□□□ 1.8
CLN3-215ENST00000565236 ANKRD33Q7Z3H0 272 aa26.3■■□□□ 1.8
CLN3-215ENST00000565236 AP5M1Q9H0R1 490 aa26.3■■□□□ 1.8
CLN3-215ENST00000565236 CPVLQ9H3G5 476 aa26.3■■□□□ 1.8
CLN3-215ENST00000565236 VTA1Q9NP79 307 aa26.3■■□□□ 1.8
CLN3-215ENST00000565236 PDGFCQ9NRA1 345 aa26.3■■□□□ 1.8
CLN3-215ENST00000565236 TMEM39AQ9NV64 488 aa26.3■■□□□ 1.8
CLN3-215ENST00000565236 TAPT1Q6NXT6 567 aa26.29■■□□□ 1.8
CLN3-215ENST00000565236 FBXO16Q8IX29 292 aaPredicted RBP26.29■■□□□ 1.8
CLN3-215ENST00000565236 MORC4Q8TE76 937 aa26.29■■□□□ 1.8
CLN3-215ENST00000565236 GNEQ9Y223 722 aaKnown RBP26.29■■□□□ 1.8
CLN3-215ENST00000565236 LTBP2Q14767 1821 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 LOC102724159A0A0B4J2E5 919 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 RAG1P15918 1043 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 ALDH5A1P51649 535 aaPredicted RBP26.28■■□□□ 1.8
CLN3-215ENST00000565236 NKX3-2P78367 333 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 BEX3Q00994 111 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 TRDNQ13061 729 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 PWP2Q15269 919 aaKnown RBP26.28■■□□□ 1.8
CLN3-215ENST00000565236 USH1GQ495M9 461 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 ASPRV1Q53RT3 343 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 IFIT1BQ5T764 474 aaKnown RBP26.28■■□□□ 1.8
CLN3-215ENST00000565236 SLC30A10Q6XR72 485 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 KIAA1211Q6ZU35 1233 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 TLK2Q86UE8 772 aa26.28■■□□□ 1.8
CLN3-215ENST00000565236 U3KPZ7 1027 aaPredicted RBP26.28■■□□□ 1.8
CLN3-215ENST00000565236 KIAA0355O15063 1070 aa26.27■■□□□ 1.8
CLN3-215ENST00000565236 CTAGE5O15320 804 aa26.27■■□□□ 1.8
CLN3-215ENST00000565236 DYNC1LI2O43237 492 aaPredicted RBP26.27■■□□□ 1.8
CLN3-215ENST00000565236 PARP1P09874 1014 aaKnown RBP26.27■■□□□ 1.8
CLN3-215ENST00000565236 SMPD1P17405 629 aa26.27■■□□□ 1.8
CLN3-215ENST00000565236 RPS6P62753 249 aaKnown RBP26.27■■□□□ 1.8
CLN3-215ENST00000565236 FAAP100Q0VG06 881 aa26.27■■□□□ 1.8
CLN3-215ENST00000565236 ADGRF4Q8IZF3 695 aa26.27■■□□□ 1.8
CLN3-215ENST00000565236 MROH7Q68CQ1 1323 aa26.27■■□□□ 1.8
CLN3-215ENST00000565236 A0A0U1RQG5 324 aaPredicted RBP26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms