RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RNF180Q86T96 592 aa17.47■□□□□ 0.39
CLN3-213ENST00000565047 FERMT2Q96AC1 680 aa17.47■□□□□ 0.39
CLN3-213ENST00000565047 TSEN34Q9BSV6 310 aaKnown RBP17.47■□□□□ 0.39
CLN3-213ENST00000565047 UPF3AQ9H1J1 476 aaKnown RBP17.47■□□□□ 0.39
CLN3-213ENST00000565047 ZHX1Q9UKY1 873 aaPredicted RBP17.47■□□□□ 0.39
CLN3-213ENST00000565047 TAF6LQ9Y6J9 622 aa17.47■□□□□ 0.39
CLN3-213ENST00000565047 DDX49Q9Y6V7 483 aaKnown RBP17.47■□□□□ 0.39
CLN3-213ENST00000565047 MCM3APO60318 1980 aa17.47■□□□□ 0.39
CLN3-213ENST00000565047 NFIBO00712 420 aa17.46■□□□□ 0.39
CLN3-213ENST00000565047 CYP21A2P08686 494 aa17.46■□□□□ 0.39
CLN3-213ENST00000565047 GOLGA8HP0CJ92 632 aa17.46■□□□□ 0.39
CLN3-213ENST00000565047 GJA9P57773 515 aa17.46■□□□□ 0.39
CLN3-213ENST00000565047 TRIM60Q495X7 471 aa17.46■□□□□ 0.39
CLN3-213ENST00000565047 CCDC178Q5BJE1 867 aa17.46■□□□□ 0.39
CLN3-213ENST00000565047 GPATCH4Q5T3I0 446 aaKnown RBP17.46■□□□□ 0.39
CLN3-213ENST00000565047 IQCA1Q86XH1 822 aa17.46■□□□□ 0.39
CLN3-213ENST00000565047 PNMA1Q8ND90 353 aa17.46■□□□□ 0.39
CLN3-213ENST00000565047 CPVLQ9H3G5 476 aa17.46■□□□□ 0.39
CLN3-213ENST00000565047 TNKSO95271 1327 aa17.46■□□□□ 0.38
CLN3-213ENST00000565047 WDR19Q8NEZ3 1342 aa17.46■□□□□ 0.38
CLN3-213ENST00000565047 LRRC37A2A6NM11 1700 aa17.45■□□□□ 0.38
CLN3-213ENST00000565047 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.45■□□□□ 0.38
CLN3-213ENST00000565047 A0A1W2PQ45 241 aaPredicted RBP17.45■□□□□ 0.38
CLN3-213ENST00000565047 A0A1W2PQY0 241 aa17.45■□□□□ 0.38
CLN3-213ENST00000565047 ACLYP53396 1101 aa17.45■□□□□ 0.38
CLN3-213ENST00000565047 BAATQ14032 418 aaPredicted RBP17.45■□□□□ 0.38
CLN3-213ENST00000565047 TAPT1Q6NXT6 567 aa17.45■□□□□ 0.38
CLN3-213ENST00000565047 CYB5R4Q7L1T6 521 aa17.45■□□□□ 0.38
CLN3-213ENST00000565047 KRT23Q9C075 422 aa17.45■□□□□ 0.38
CLN3-213ENST00000565047 UBA5Q9GZZ9 404 aa17.45■□□□□ 0.38
CLN3-213ENST00000565047 CNNM2Q9H8M5 875 aa17.45■□□□□ 0.38
CLN3-213ENST00000565047 GNEQ9Y223 722 aaKnown RBP17.45■□□□□ 0.38
CLN3-213ENST00000565047 TRIM43BA6NCK2 446 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 ASB14A6NK59 587 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 MYCNP04198 464 aaPredicted RBP17.44■□□□□ 0.38
CLN3-213ENST00000565047 KCNA10Q16322 511 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 LRIT3Q3SXY7 679 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 TMEM63BQ5T3F8 832 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 SH3RF1Q7Z6J0 888 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 MAP4K1Q92918 833 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 TRIM43Q96BQ3 446 aaPredicted RBP17.44■□□□□ 0.38
CLN3-213ENST00000565047 PDLIM7Q9NR12 457 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 ATP11BQ9Y2G3 1177 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 LTBP2Q14767 1821 aa17.44■□□□□ 0.38
CLN3-213ENST00000565047 MOXD2PA6NHM9 499 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 PTGS1P23219 599 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 MDM2Q00987 491 aaPredicted RBP17.43■□□□□ 0.38
CLN3-213ENST00000565047 TLE2Q04725 743 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 NSMFQ6X4W1 530 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 STOX1Q6ZVD7 989 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 TDHQ8IZJ6 230 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 RUFY2Q8WXA3 655 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 LRCH3Q96II8 777 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 KAT14Q9H8E8 782 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 PDGFCQ9NRA1 345 aa17.43■□□□□ 0.38
CLN3-213ENST00000565047 LOC102724159A0A0B4J2E5 919 aa17.42■□□□□ 0.38
CLN3-213ENST00000565047 EDNRBP24530 442 aa17.42■□□□□ 0.38
CLN3-213ENST00000565047 ITGB8P26012 769 aa17.42■□□□□ 0.38
CLN3-213ENST00000565047 CDK7P50613 346 aa17.42■□□□□ 0.38
CLN3-213ENST00000565047 PWP2Q15269 919 aaKnown RBP17.42■□□□□ 0.38
CLN3-213ENST00000565047 SLC30A10Q6XR72 485 aa17.42■□□□□ 0.38
CLN3-213ENST00000565047 ANKRD33Q7Z3H0 272 aa17.42■□□□□ 0.38
CLN3-213ENST00000565047 ADGRF4Q8IZF3 695 aa17.42■□□□□ 0.38
CLN3-213ENST00000565047 RGS22Q8NE09 1264 aa17.42■□□□□ 0.38
CLN3-213ENST00000565047 UBE2OQ9C0C9 1292 aaKnown RBP17.42■□□□□ 0.38
CLN3-213ENST00000565047 PNMA2Q9UL42 364 aa17.42■□□□□ 0.38
CLN3-213ENST00000565047 LAMA2P24043 3122 aaKnown RBP17.42■□□□□ 0.38
CLN3-213ENST00000565047 RBM47A0AV96 593 aaKnown RBP17.41■□□□□ 0.38
CLN3-213ENST00000565047 ASGR1P07306 291 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 SMPD1P17405 629 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 ALDH5A1P51649 535 aaPredicted RBP17.41■□□□□ 0.38
CLN3-213ENST00000565047 RPS6P62753 249 aaKnown RBP17.41■□□□□ 0.38
CLN3-213ENST00000565047 TNFAIP2Q03169 654 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 SLC35G1Q2M3R5 365 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 ASPRV1Q53RT3 343 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 STAG2Q8N3U4 1231 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 MTMR8Q96EF0 704 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 TOX2Q96NM4 488 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 JMJD4Q9H9V9 463 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 U3KPZ7 1027 aaPredicted RBP17.41■□□□□ 0.38
CLN3-213ENST00000565047 ELP1O95163 1332 aa17.41■□□□□ 0.38
CLN3-213ENST00000565047 PALM3A6NDB9 673 aaPredicted RBP17.4■□□□□ 0.38
CLN3-213ENST00000565047 E7EWF7 191 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 C6orf222P0C671 652 aaPredicted RBP17.4■□□□□ 0.38
CLN3-213ENST00000565047 FAAP100Q0VG06 881 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 IQSEC1Q6DN90 963 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 SKAP1Q86WV1 359 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 FBXO16Q8IX29 292 aaPredicted RBP17.4■□□□□ 0.38
CLN3-213ENST00000565047 TBC1D5Q92609 795 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 MAF1Q9H063 256 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 SENP2Q9HC62 589 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 VTA1Q9NP79 307 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 MAD2L2Q9UI95 211 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 Q9Y3F1 56 aa17.4■□□□□ 0.38
CLN3-213ENST00000565047 KIAA0355O15063 1070 aa17.39■□□□□ 0.37
CLN3-213ENST00000565047 ANTXR2P58335 489 aa17.39■□□□□ 0.37
CLN3-213ENST00000565047 COL9A3Q14050 684 aaPredicted RBP17.39■□□□□ 0.37
CLN3-213ENST00000565047 CDC37Q16543 378 aaPredicted RBP17.39■□□□□ 0.37
CLN3-213ENST00000565047 GNASQ5JWF2 1037 aa17.39■□□□□ 0.37
CLN3-213ENST00000565047 IFIT1BQ5T764 474 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms