RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 REV3LO60673 3130 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 MYH7P12883 1935 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 GRIN2DO15399 1336 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 PFKMP08237 780 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 IFIT2P09913 472 aaKnown RBP8.77□□□□□ -1.01
VPS4A-203ENST00000564399 SUPT20HL2P0C7V6 817 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 CYP2C9P11712 490 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 PTGS1P23219 599 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 ADD2P35612 726 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 NKX3-2P78367 333 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 HSP90AB4PQ58FF6 505 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 CTR9Q6PD62 1173 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS4A-203ENST00000564399 EEPD1Q7L9B9 569 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 CLASRPQ8N2M8 674 aaKnown RBP8.77□□□□□ -1.01
VPS4A-203ENST00000564399 RHPN1Q8TCX5 695 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 AGBL1Q96MI9 1066 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 UIMC1Q96RL1 719 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 SLC9A7Q96T83 725 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 FTOQ9C0B1 505 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS4A-203ENST00000564399 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS4A-203ENST00000564399 KATNBL1Q9H079 304 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 ALDH8A1Q9H2A2 487 aaPredicted RBP8.77□□□□□ -1.01
VPS4A-203ENST00000564399 ACAD9Q9H845 621 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 MKNK2Q9HBH9 465 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 SLC38A10Q9HBR0 1119 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 C11orf16Q9NQ32 467 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 NYAP2Q9P242 653 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 CLIP2Q9UDT6 1046 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 FEM1BQ9UK73 627 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 GNEQ9Y223 722 aaKnown RBP8.77□□□□□ -1.01
VPS4A-203ENST00000564399 COG6Q9Y2V7 657 aa8.77□□□□□ -1.01
VPS4A-203ENST00000564399 PI4K2BG5E9Z4 385 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 SMPD1P17405 629 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 OAZ1P54368 228 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 TAP1Q03518 808 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 GRB10Q13322 594 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 IQSEC1Q6DN90 963 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 CEP85Q6P2H3 762 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 FAM133AQ8N9E0 248 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS4A-203ENST00000564399 VWCEQ96DN2 955 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS4A-203ENST00000564399 BOLA2Q9H3K6 86 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 PDGFCQ9NRA1 345 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 TRMT13Q9NUP7 481 aaKnown RBP8.76□□□□□ -1.01
VPS4A-203ENST00000564399 PAG1Q9NWQ8 432 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 TNKSO95271 1327 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 GREB1LQ9C091 1923 aaPredicted RBP8.76□□□□□ -1.01
VPS4A-203ENST00000564399 MYO7AQ13402 2215 aa8.76□□□□□ -1.01
VPS4A-203ENST00000564399 SOWAHBA6NEL2 793 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 MINDY4BA8MYZ0 360 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 RASA1P20936 1047 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 SSTR3P32745 418 aaPredicted RBP8.75□□□□□ -1.01
VPS4A-203ENST00000564399 IKQ13123 557 aaPredicted RBP8.75□□□□□ -1.01
VPS4A-203ENST00000564399 CSPP1Q1MSJ5 1256 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 FAM47CQ5HY64 1035 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 KIAA1211Q6ZU35 1233 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 HERC6Q8IVU3 1022 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 FBXO16Q8IX29 292 aaPredicted RBP8.75□□□□□ -1.01
VPS4A-203ENST00000564399 RETREG2Q8NC44 543 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 PHOSPHO2Q8TCD6 241 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 CD320Q9NPF0 282 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 A1CFQ9NQ94 594 aaKnown RBP8.75□□□□□ -1.01
VPS4A-203ENST00000564399 GPHNQ9NQX3 736 aaPredicted RBP8.75□□□□□ -1.01
VPS4A-203ENST00000564399 RNF146Q9NTX7 359 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 ARPP21Q9UBL0 812 aaPredicted RBP8.75□□□□□ -1.01
VPS4A-203ENST00000564399 Q9Y3F1 56 aa8.75□□□□□ -1.01
VPS4A-203ENST00000564399 DDX49Q9Y6V7 483 aaKnown RBP8.75□□□□□ -1.01
VPS4A-203ENST00000564399 PRR33A8MZF0 331 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 TMEM232C9JQI7 657 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 ARHGEF15O94989 841 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 CHGBP05060 677 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 MYL3P08590 195 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 FDX1P10109 184 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 BMP3P12645 472 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 ALAS1P13196 640 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 RFC2P35250 354 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 KCNJ6P48051 423 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 MRE11P49959 708 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 UBE3CQ15386 1083 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 TMEM63BQ5T3F8 832 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 SLFN13Q68D06 897 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 ZNF444Q8N0Y2 327 aaPredicted RBP8.74□□□□□ -1.01
VPS4A-203ENST00000564399 GJD3Q8N144 294 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 LRRC47Q8N1G4 583 aaKnown RBP8.74□□□□□ -1.01
VPS4A-203ENST00000564399 GDPD5Q8WTR4 605 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 CHMP4CQ96CF2 233 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 KIF1BPQ96EK5 621 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 TRERF1Q96PN7 1200 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 ZBED2Q9BTP6 218 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 POLR3EQ9NVU0 708 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 NOD1Q9Y239 953 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 ZBED9Q6R2W3 1325 aa8.74□□□□□ -1.01
VPS4A-203ENST00000564399 SCN10AQ9Y5Y9 1956 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 LPXNO60711 386 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 PRDM1O75626 825 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 IQCF3P0C7M6 154 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 ALADP13716 330 aa8.73□□□□□ -1.01
VPS4A-203ENST00000564399 STAT2P52630 851 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms