RNA–Protein interactions for RNA: ENST00000564106.1

UBFD1-203, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 2

Gene UBFD1, Length 587 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-203ENST00000564106 NEDD1Q8NHV4 660 aa11.25□□□□□ -0.61
UBFD1-203ENST00000564106 NUP133Q8WUM0 1156 aa11.25□□□□□ -0.61
UBFD1-203ENST00000564106 ATG4CQ96DT6 458 aa11.25□□□□□ -0.61
UBFD1-203ENST00000564106 CCDC17Q96LX7 622 aa11.25□□□□□ -0.61
UBFD1-203ENST00000564106 MOV10L1Q9BXT6 1211 aaKnown RBP11.25□□□□□ -0.61
UBFD1-203ENST00000564106 RNF26Q9BY78 433 aaPredicted RBP11.25□□□□□ -0.61
UBFD1-203ENST00000564106 SCAND2PQ9GZW5 306 aaPredicted RBP11.25□□□□□ -0.61
UBFD1-203ENST00000564106 RABGAP1Q9Y3P9 1069 aa11.25□□□□□ -0.61
UBFD1-203ENST00000564106 RPTORQ8N122 1335 aa11.25□□□□□ -0.61
UBFD1-203ENST00000564106 MYH4Q9Y623 1939 aa11.25□□□□□ -0.61
UBFD1-203ENST00000564106 TRAK2O60296 914 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 DEXIO95424 95 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 EEF2P13639 858 aaKnown RBP11.24□□□□□ -0.61
UBFD1-203ENST00000564106 PTPREP23469 700 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 CDC27P30260 824 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 MAPK4P31152 587 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 ADD1P35611 737 aaKnown RBP11.24□□□□□ -0.61
UBFD1-203ENST00000564106 ICA1Q05084 483 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 TROAPQ12815 778 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 NTRK3Q16288 839 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 KLHL40Q2TBA0 621 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 FAM47AQ5JRC9 791 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 FOXD4L5Q5VV16 416 aaPredicted RBP11.24□□□□□ -0.61
UBFD1-203ENST00000564106 TMEM179Q6ZVK1 233 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 RASGRP2Q7LDG7 609 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 BRAPQ7Z569 592 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 FBXO18Q8NFZ0 1043 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 NKX2-3Q8TAU0 364 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 FOXD4L4Q8WXT5 416 aaPredicted RBP11.24□□□□□ -0.61
UBFD1-203ENST00000564106 NUP88Q99567 741 aaPredicted RBP11.24□□□□□ -0.61
UBFD1-203ENST00000564106 NUDT12Q9BQG2 462 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 CABP5Q9NP86 173 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 CFAP45Q9UL16 551 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 TMX2Q9Y320 296 aa11.24□□□□□ -0.61
UBFD1-203ENST00000564106 SOX1O00570 391 aaPredicted RBP11.23□□□□□ -0.61
UBFD1-203ENST00000564106 COBLO75128 1261 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 XRCC5P13010 732 aaKnown RBP11.23□□□□□ -0.61
UBFD1-203ENST00000564106 FDPSP14324 419 aaKnown RBP11.23□□□□□ -0.61
UBFD1-203ENST00000564106 CYP2C19P33261 490 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 USP14P54578 494 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 MAP2K5Q13163 448 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 GRB14Q14449 540 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 WDR78Q5VTH9 848 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 SAMD1Q6SPF0 538 aaPredicted RBP11.23□□□□□ -0.61
UBFD1-203ENST00000564106 CCDC144CPQ8IYA2 1237 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 FAM177A1Q8N128 213 aaPredicted RBP11.23□□□□□ -0.61
UBFD1-203ENST00000564106 PNMA1Q8ND90 353 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 ZNF396Q96N95 335 aaPredicted RBP11.23□□□□□ -0.61
UBFD1-203ENST00000564106 APBA2Q99767 749 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 LZTS2Q9BRK4 669 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 ALG1Q9BT22 464 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 MYL10Q9BUA6 226 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 TANGO6Q9C0B7 1094 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 VCPKMTQ9H867 229 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 SENP2Q9HC62 589 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 OGDHLQ9ULD0 1010 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 STX8Q9UNK0 236 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 DDX49Q9Y6V7 483 aaKnown RBP11.23□□□□□ -0.61
UBFD1-203ENST00000564106 ELP1O95163 1332 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 PLXNA1Q9UIW2 1896 aa11.23□□□□□ -0.61
UBFD1-203ENST00000564106 TOP1P11387 765 aaKnown RBP11.22□□□□□ -0.61
UBFD1-203ENST00000564106 COL6A1P12109 1028 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 RXRAP19793 462 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 DSG3P32926 999 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 RESTQ13127 1097 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 GNL2Q13823 731 aaKnown RBP11.22□□□□□ -0.61
UBFD1-203ENST00000564106 TMEM132BQ14DG7 1078 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 SAFBQ15424 915 aaKnown RBP eCLIP11.22□□□□□ -0.61
UBFD1-203ENST00000564106 RCSD1Q6JBY9 416 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 TMTC3Q6ZXV5 915 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 RAB11FIP4Q86YS3 637 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 C7orf61Q8IZ16 206 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 REPS2Q8NFH8 660 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 SOCS4Q8WXH5 440 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 SYAP1Q96A49 352 aaPredicted RBP11.22□□□□□ -0.61
UBFD1-203ENST00000564106 SLC26A6Q9BXS9 759 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 SPATC1LQ9H0A9 340 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 HMX1Q9NP08 348 aaPredicted RBP11.22□□□□□ -0.61
UBFD1-203ENST00000564106 FAM217BQ9NTX9 383 aaPredicted RBP11.22□□□□□ -0.61
UBFD1-203ENST00000564106 LMBRD1Q9NUN5 540 aa11.22□□□□□ -0.61
UBFD1-203ENST00000564106 ZMYND8Q9ULU4 1186 aaPredicted RBP11.22□□□□□ -0.61
UBFD1-203ENST00000564106 SMCHD1A6NHR9 2005 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 IGKV6D-41A0A0C4DH26 115 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 SLC15A5A6NIM6 579 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 PRPF3O43395 683 aaKnown RBP11.21□□□□□ -0.61
UBFD1-203ENST00000564106 PRPF40AO75400 957 aaKnown RBP11.21□□□□□ -0.61
UBFD1-203ENST00000564106 SYN1P17600 705 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 ERCC3P19447 782 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 ADORA2AP29274 412 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 RGS2P41220 211 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 NOVP48745 357 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 ATP2B2Q01814 1243 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 PRAMEF19Q5SWL8 479 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 FAM83BQ5T0W9 1011 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 ANO1Q5XXA6 986 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 FERMT3Q86UX7 667 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 PHKBQ93100 1093 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 IL17RBQ9NRM6 502 aa11.21□□□□□ -0.61
UBFD1-203ENST00000564106 NMT2O60551 498 aa11.2□□□□□ -0.62
UBFD1-203ENST00000564106 FLOT1O75955 427 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms