RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 EEPD1Q7L9B9 569 aa20.75■□□□□ 0.91
NME3-205ENST00000563854 PURBQ96QR8 312 aaKnown RBP20.75■□□□□ 0.91
NME3-205ENST00000563854 KAT14Q9H8E8 782 aa20.75■□□□□ 0.91
NME3-205ENST00000563854 SPC25Q9HBM1 224 aa20.75■□□□□ 0.91
NME3-205ENST00000563854 STARD7Q9NQZ5 370 aa20.75■□□□□ 0.91
NME3-205ENST00000563854 PDLIM7Q9NR12 457 aa20.75■□□□□ 0.91
NME3-205ENST00000563854 LTBP2Q14767 1821 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 PTPDC1A2A3K4 754 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 LRRC37A2A6NM11 1700 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 NFIBO00712 420 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 TLE2Q04725 743 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 KCNA10Q16322 511 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 SH3RF1Q7Z6J0 888 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 PNMA1Q8ND90 353 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 TSEN34Q9BSV6 310 aaKnown RBP20.74■□□□□ 0.91
NME3-205ENST00000563854 CPVLQ9H3G5 476 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 ASTN1O14525 1302 aa20.74■□□□□ 0.91
NME3-205ENST00000563854 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.73■□□□□ 0.91
NME3-205ENST00000563854 BAATQ14032 418 aaPredicted RBP20.73■□□□□ 0.91
NME3-205ENST00000563854 CCDC178Q5BJE1 867 aa20.73■□□□□ 0.91
NME3-205ENST00000563854 DGKHQ86XP1 1220 aa20.73■□□□□ 0.91
NME3-205ENST00000563854 FBXO16Q8IX29 292 aaPredicted RBP20.73■□□□□ 0.91
NME3-205ENST00000563854 NUP133Q8WUM0 1156 aa20.73■□□□□ 0.91
NME3-205ENST00000563854 VTI1AQ96AJ9 217 aa20.73■□□□□ 0.91
NME3-205ENST00000563854 ZSCAN10Q96SZ4 725 aaPredicted RBP20.73■□□□□ 0.91
NME3-205ENST00000563854 UBA5Q9GZZ9 404 aa20.73■□□□□ 0.91
NME3-205ENST00000563854 KATNBL1Q9H079 304 aa20.73■□□□□ 0.91
NME3-205ENST00000563854 TNKSO95271 1327 aa20.73■□□□□ 0.91
NME3-205ENST00000563854 MOXD2PA6NHM9 499 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 SNHG28P0DPA3 235 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 CALML3P27482 149 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 TNFAIP2Q03169 654 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 USH1GQ495M9 461 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 GPATCH4Q5T3I0 446 aaKnown RBP20.72■□□□□ 0.91
NME3-205ENST00000563854 SLC30A10Q6XR72 485 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 KLHDC9Q8NEP7 349 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 BADQ92934 168 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 UBAC1Q9BSL1 405 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 KRT23Q9C075 422 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 ZSWIM5Q9P217 1185 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 RAD50Q92878 1312 aa20.72■□□□□ 0.91
NME3-205ENST00000563854 TRIM43BA6NCK2 446 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 ASGR1P07306 291 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 CLTBP09497 229 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 LRIT3Q3SXY7 679 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 GNASQ5JWF2 1037 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 C1orf53Q5VUE5 145 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 ENAHQ8N8S7 591 aaPredicted RBP20.71■□□□□ 0.91
NME3-205ENST00000563854 PCSK9Q8NBP7 692 aaKnown RBP20.71■□□□□ 0.91
NME3-205ENST00000563854 RUFY2Q8WXA3 655 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 TRIM43Q96BQ3 446 aaPredicted RBP20.71■□□□□ 0.91
NME3-205ENST00000563854 GLT1D1Q96MS3 346 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 CNNM2Q9H8M5 875 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 LAMA3Q16787 3333 aa20.71■□□□□ 0.91
NME3-205ENST00000563854 LCTP09848 1927 aa20.7■□□□□ 0.91
NME3-205ENST00000563854 DHX16O60231 1041 aaKnown RBP20.7■□□□□ 0.9
NME3-205ENST00000563854 PTGS1P23219 599 aa20.7■□□□□ 0.9
NME3-205ENST00000563854 CST5P28325 142 aaPredicted RBP20.7■□□□□ 0.9
NME3-205ENST00000563854 NT5C2P49902 561 aa20.7■□□□□ 0.9
NME3-205ENST00000563854 GJA9P57773 515 aa20.7■□□□□ 0.9
NME3-205ENST00000563854 BEX3Q00994 111 aa20.7■□□□□ 0.9
NME3-205ENST00000563854 TLK2Q86UE8 772 aa20.7■□□□□ 0.9
NME3-205ENST00000563854 UPF3AQ9H1J1 476 aaKnown RBP20.7■□□□□ 0.9
NME3-205ENST00000563854 PDGFCQ9NRA1 345 aa20.7■□□□□ 0.9
NME3-205ENST00000563854 CHMLP26374 656 aa20.69■□□□□ 0.9
NME3-205ENST00000563854 ALDH5A1P51649 535 aaPredicted RBP20.69■□□□□ 0.9
NME3-205ENST00000563854 CCSAPQ6IQ19 270 aaPredicted RBP20.69■□□□□ 0.9
NME3-205ENST00000563854 RNF207Q6ZRF8 634 aa20.69■□□□□ 0.9
NME3-205ENST00000563854 CLEC4DQ8WXI8 215 aa20.69■□□□□ 0.9
NME3-205ENST00000563854 TMEM39AQ9NV64 488 aa20.69■□□□□ 0.9
NME3-205ENST00000563854 ADD3Q9UEY8 706 aaKnown RBP20.69■□□□□ 0.9
NME3-205ENST00000563854 PNMA2Q9UL42 364 aa20.69■□□□□ 0.9
NME3-205ENST00000563854 DCDC2CA8MYV0 355 aa20.68■□□□□ 0.9
NME3-205ENST00000563854 RAG1P15918 1043 aa20.68■□□□□ 0.9
NME3-205ENST00000563854 PTH1RQ03431 593 aa20.68■□□□□ 0.9
NME3-205ENST00000563854 CDC37Q16543 378 aaPredicted RBP20.68■□□□□ 0.9
NME3-205ENST00000563854 IFIT1BQ5T764 474 aaKnown RBP20.68■□□□□ 0.9
NME3-205ENST00000563854 AP5M1Q9H0R1 490 aa20.68■□□□□ 0.9
NME3-205ENST00000563854 WDR19Q8NEZ3 1342 aa20.68■□□□□ 0.9
NME3-205ENST00000563854 DYNC1LI2O43237 492 aaPredicted RBP20.67■□□□□ 0.9
NME3-205ENST00000563854 PARP1P09874 1014 aaKnown RBP20.67■□□□□ 0.9
NME3-205ENST00000563854 SMPD1P17405 629 aa20.67■□□□□ 0.9
NME3-205ENST00000563854 TRDNQ13061 729 aa20.67■□□□□ 0.9
NME3-205ENST00000563854 ASPRV1Q53RT3 343 aa20.67■□□□□ 0.9
NME3-205ENST00000563854 KIAA1211Q6ZU35 1233 aa20.67■□□□□ 0.9
NME3-205ENST00000563854 Q7L0L9 218 aa20.67■□□□□ 0.9
NME3-205ENST00000563854 CYB5R4Q7L1T6 521 aa20.67■□□□□ 0.9
NME3-205ENST00000563854 ANKS1AQ92625 1134 aa20.67■□□□□ 0.9
NME3-205ENST00000563854 VAT1LQ9HCJ6 419 aa20.67■□□□□ 0.9
NME3-205ENST00000563854 VTA1Q9NP79 307 aa20.67■□□□□ 0.9
NME3-205ENST00000563854 A0A0U1RQG5 324 aaPredicted RBP20.66■□□□□ 0.9
NME3-205ENST00000563854 ITGB8P26012 769 aa20.66■□□□□ 0.9
NME3-205ENST00000563854 RPS6P62753 249 aaKnown RBP20.66■□□□□ 0.9
NME3-205ENST00000563854 FAAP100Q0VG06 881 aa20.66■□□□□ 0.9
NME3-205ENST00000563854 TMEM63BQ5T3F8 832 aa20.66■□□□□ 0.9
NME3-205ENST00000563854 TAPT1Q6NXT6 567 aa20.66■□□□□ 0.9
NME3-205ENST00000563854 ADGRF4Q8IZF3 695 aa20.66■□□□□ 0.9
NME3-205ENST00000563854 DEFB123Q8N688 67 aa20.66■□□□□ 0.9
NME3-205ENST00000563854 GNEQ9Y223 722 aaKnown RBP20.66■□□□□ 0.9
NME3-205ENST00000563854 ELP1O95163 1332 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms