RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ERVK-24P63145 666 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 Q3C1V9 767 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 MUM1L1Q5H9M0 696 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 LARP1BQ659C4 914 aaKnown RBP19.1■□□□□ 0.65
VPS4A-202ENST00000562754 RIOX2Q8IUF8 465 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 CCDC148Q8NFR7 591 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 FBXO18Q8NFZ0 1043 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 CLEC4DQ8WXI8 215 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 PHF20Q9BVI0 1012 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 MOV10L1Q9BXT6 1211 aaKnown RBP19.1■□□□□ 0.65
VPS4A-202ENST00000562754 R3HDMLQ9H3Y0 253 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 HOMER2Q9NSB8 354 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 CPA4Q9UI42 421 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 TLR2O60603 784 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 ALDH1A1P00352 501 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 BCRP11274 1271 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 PDCP20941 246 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 PKP1Q13835 747 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 FAM110CQ1W6H9 321 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 ZMYND12Q9H0C1 365 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 ZFYVE28Q9HCC9 887 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 RNF146Q9NTX7 359 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 PNMA2Q9UL42 364 aa19.09■□□□□ 0.65
VPS4A-202ENST00000562754 LCTP09848 1927 aa19.08■□□□□ 0.65
VPS4A-202ENST00000562754 NFIBO00712 420 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 MMP1P03956 469 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 XBP1P17861 261 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 NLRP5P59047 1200 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 TRAF1Q13077 416 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 TRIM29Q14134 588 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 TKFCQ3LXA3 575 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 C17orf99Q6UX52 265 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 FAM177A1Q8N128 213 aaPredicted RBP19.08■□□□□ 0.64
VPS4A-202ENST00000562754 CCDC12Q8WUD4 166 aaPredicted RBP19.08■□□□□ 0.64
VPS4A-202ENST00000562754 TRERF1Q96PN7 1200 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 MTMR6Q9Y217 621 aa19.08■□□□□ 0.64
VPS4A-202ENST00000562754 MRPL11Q9Y3B7 192 aaKnown RBP19.08■□□□□ 0.64
VPS4A-202ENST00000562754 PLXNB2O15031 1838 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 VPS37CA5D8V6 355 aaPredicted RBP19.07■□□□□ 0.64
VPS4A-202ENST00000562754 SMCO2A6NFE2 343 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 STX6O43752 255 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 ADCY7P51828 1080 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 DAGLBQ8NCG7 672 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 GPRC5AQ8NFJ5 357 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 OXER1Q8TDS5 423 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 PORCNQ9H237 461 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 RIC8AQ9NPQ8 531 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 RNF186Q9NXI6 227 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 ZSWIM8A7E2V4 1837 aa19.07■□□□□ 0.64
VPS4A-202ENST00000562754 H3BQV1 296 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 ERCC3P19447 782 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 IFFO2Q5TF58 517 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 RGS22Q8NE09 1264 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 SHCBP1Q8NEM2 672 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 TBC1D5Q92609 795 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 CFHR5Q9BXR6 569 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 ACAD9Q9H845 621 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 C6orf50Q9HD87 102 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 PCDHA4Q9UN74 947 aa19.06■□□□□ 0.64
VPS4A-202ENST00000562754 KIF28PB7ZC32 967 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 SLC25A27O95847 323 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 CALML3P27482 149 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 COPB2P35606 906 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 GHRHRQ02643 423 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 UBE2SQ16763 222 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 NCAPG2Q86XI2 1143 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 DIS3L2Q8IYB7 885 aaKnown RBP19.05■□□□□ 0.64
VPS4A-202ENST00000562754 DNAJC5GQ8N7S2 189 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 CHST13Q8NET6 341 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 RASGRP4Q8TDF6 673 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 CUL5Q93034 780 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 PSTPIP2Q9H939 334 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 EFCC1Q9HA90 598 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 ZDHHC9Q9Y397 364 aa19.05■□□□□ 0.64
VPS4A-202ENST00000562754 M0R2N6 131 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 MEIS2O14770 477 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 MGAMO43451 1857 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 TRPA1O75762 1119 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 TBC1D8O95759 1140 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 KRT2P35908 639 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 CCNA1P78396 465 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 GALNT17Q6IS24 598 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 USP17L6PQ6QN14 398 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 SLC30A10Q6XR72 485 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.04■□□□□ 0.64
VPS4A-202ENST00000562754 BLIDQ8IZY5 108 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 TNFRSF25Q93038 417 aa19.04■□□□□ 0.64
VPS4A-202ENST00000562754 ZNF236Q9UL36 1845 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 BTBD18B2RXH4 712 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 BRD1O95696 1058 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 CFBP00751 764 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 GNA11P29992 359 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 HOXA13P31271 388 aaPredicted RBP19.03■□□□□ 0.64
VPS4A-202ENST00000562754 CLK2P49760 499 aaKnown RBP19.03■□□□□ 0.64
VPS4A-202ENST00000562754 HSD17B4P51659 736 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 NR5A1Q13285 461 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 NOM1Q5C9Z4 860 aaKnown RBP19.03■□□□□ 0.64
VPS4A-202ENST00000562754 NSMFQ6X4W1 530 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 MROH8Q9H579 483 aa19.03■□□□□ 0.64
VPS4A-202ENST00000562754 A1CFQ9NQ94 594 aaKnown RBP19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms