RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SHCBP1Q8NEM2 672 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 NPLOC4Q8TAT6 608 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 PHKBQ93100 1093 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 COA7Q96BR5 231 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 ZNF274Q96GC6 653 aaPredicted RBP11.37□□□□□ -0.59
CLK3-208ENST00000562626 FGD4Q96M96 766 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 TRERF1Q96PN7 1200 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 RNF146Q9NTX7 359 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 SRRDQ9UH36 339 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 PTCH2Q9Y6C5 1203 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 DDX49Q9Y6V7 483 aaKnown RBP11.37□□□□□ -0.59
CLK3-208ENST00000562626 ASTN1O14525 1302 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 ZBTB5O15062 677 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 PFKFB2O60825 505 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 FDX1P10109 184 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 MAPK4P31152 587 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 FLT3LGP49771 235 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 RCAN1P53805 252 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 GRB14Q14449 540 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 CCL14Q16627 93 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 SYNE3Q6ZMZ3 975 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 PLEKHH3Q7Z736 793 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 CTU1Q7Z7A3 348 aaKnown RBP11.36□□□□□ -0.59
CLK3-208ENST00000562626 GPKOWQ92917 476 aaPredicted RBP eCLIP11.36□□□□□ -0.59
CLK3-208ENST00000562626 MROH8Q9H579 483 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 UPF2Q9HAU5 1272 aaKnown RBP11.36□□□□□ -0.59
CLK3-208ENST00000562626 A1CFQ9NQ94 594 aaKnown RBP11.36□□□□□ -0.59
CLK3-208ENST00000562626 FLRT1Q9NZU1 646 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 PTPN22Q9Y2R2 807 aa11.36□□□□□ -0.59
CLK3-208ENST00000562626 SLC25A27O95847 323 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 ELNP15502 786 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 CYP2B6P20813 491 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 SMARCA1P28370 1054 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 ADORA2AP29274 412 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 CCNA1P78396 465 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 TRIM32Q13049 653 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 KIF22Q14807 665 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 PKN1Q16512 942 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 SLC30A10Q6XR72 485 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.35□□□□□ -0.59
CLK3-208ENST00000562626 FBXO11Q86XK2 927 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 GTF3C6Q969F1 213 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 AIFM3Q96NN9 605 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 MCOLN1Q9GZU1 580 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 RBM28Q9NW13 759 aaKnown RBP11.35□□□□□ -0.59
CLK3-208ENST00000562626 COL20A1Q9P218 1284 aa11.35□□□□□ -0.59
CLK3-208ENST00000562626 CTDP1Q9Y5B0 961 aaPredicted RBP11.35□□□□□ -0.59
CLK3-208ENST00000562626 DNAJC25-GNG10A0A024R161 153 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 PNMA6FA0A0J9YX94 578 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 SLC15A5A6NIM6 579 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 IGHA2P01877 340 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 IFNAR1P17181 557 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 GNAQP50148 359 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 CNTN2Q02246 1040 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 MAP2K5Q13163 448 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 WWC2Q6AWC2 1192 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 TRIB2Q92519 343 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 RRP36Q96EU6 259 aaKnown RBP11.34□□□□□ -0.59
CLK3-208ENST00000562626 MMP19Q99542 508 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 LZTS2Q9BRK4 669 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 AMNQ9BXJ7 453 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 ACAD9Q9H845 621 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 PCDHA1Q9Y5I3 950 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 V9GY48 417 aaPredicted RBP11.34□□□□□ -0.59
CLK3-208ENST00000562626 ALPK3Q96L96 1907 aa11.34□□□□□ -0.59
CLK3-208ENST00000562626 SOWAHBA6NEL2 793 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 STXBP3O00186 592 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 JAK2O60674 1132 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 FDPSP14324 419 aaKnown RBP11.33□□□□□ -0.6
CLK3-208ENST00000562626 BAATQ14032 418 aaPredicted RBP11.33□□□□□ -0.6
CLK3-208ENST00000562626 ZNF792Q3KQV3 632 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 NSMFQ6X4W1 530 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 CCAR1Q8IX12 1150 aaKnown RBP11.33□□□□□ -0.6
CLK3-208ENST00000562626 FAM133AQ8N9E0 248 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 CHST13Q8NET6 341 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 SH3TC2Q8TF17 1288 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 SLC26A6Q9BXS9 759 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 SLKQ9H2G2 1235 aaPredicted RBP11.33□□□□□ -0.6
CLK3-208ENST00000562626 GJB4Q9NTQ9 266 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 CYP39A1Q9NYL5 469 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 LIMCH1Q9UPQ0 1083 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 KIAA0100Q14667 2235 aaKnown RBP11.33□□□□□ -0.6
CLK3-208ENST00000562626 ABCB11O95342 1321 aa11.33□□□□□ -0.6
CLK3-208ENST00000562626 PRPF3O43395 683 aaKnown RBP11.32□□□□□ -0.6
CLK3-208ENST00000562626 HOXC6P09630 235 aa11.32□□□□□ -0.6
CLK3-208ENST00000562626 FCER1AP12319 257 aa11.32□□□□□ -0.6
CLK3-208ENST00000562626 HOXA13P31271 388 aaPredicted RBP11.32□□□□□ -0.6
CLK3-208ENST00000562626 RPS6P62753 249 aaKnown RBP11.32□□□□□ -0.6
CLK3-208ENST00000562626 ANKRD1Q15327 319 aa11.32□□□□□ -0.6
CLK3-208ENST00000562626 TKFCQ3LXA3 575 aa11.32□□□□□ -0.6
CLK3-208ENST00000562626 FBXO46Q6PJ61 603 aaPredicted RBP11.32□□□□□ -0.6
CLK3-208ENST00000562626 CCDC83Q8IWF9 413 aa11.32□□□□□ -0.6
CLK3-208ENST00000562626 NSUN7Q8NE18 718 aaKnown RBP11.32□□□□□ -0.6
CLK3-208ENST00000562626 NUDT12Q9BQG2 462 aa11.32□□□□□ -0.6
CLK3-208ENST00000562626 CWC22Q9HCG8 908 aaKnown RBP11.32□□□□□ -0.6
CLK3-208ENST00000562626 IVNS1ABPQ9Y6Y0 642 aa11.32□□□□□ -0.6
CLK3-208ENST00000562626 STRNO43815 780 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 ADCY3O60266 1144 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 GNRH1P01148 92 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 COPB2P35606 906 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms