RNA–Protein interactions for RNA: ENST00000559108.1

TPM1-217, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-217ENST00000559108 PLEKHH3Q7Z736 793 aa12.65□□□□□ -0.38
TPM1-217ENST00000559108 NPLOC4Q8TAT6 608 aa12.65□□□□□ -0.38
TPM1-217ENST00000559108 GPKOWQ92917 476 aaPredicted RBP eCLIP12.65□□□□□ -0.38
TPM1-217ENST00000559108 AIFM3Q96NN9 605 aa12.65□□□□□ -0.38
TPM1-217ENST00000559108 UPF2Q9HAU5 1272 aaKnown RBP12.65□□□□□ -0.38
TPM1-217ENST00000559108 FLRT1Q9NZU1 646 aa12.65□□□□□ -0.38
TPM1-217ENST00000559108 COL20A1Q9P218 1284 aa12.65□□□□□ -0.38
TPM1-217ENST00000559108 SRRDQ9UH36 339 aa12.65□□□□□ -0.38
TPM1-217ENST00000559108 PTCH2Q9Y6C5 1203 aa12.65□□□□□ -0.38
TPM1-217ENST00000559108 DNAJC25-GNG10A0A024R161 153 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 PNMA6FA0A0J9YX94 578 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 JAK2O60674 1132 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 MAPK4P31152 587 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 TRIM32Q13049 653 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 WWC2Q6AWC2 1192 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 SYNE3Q6ZMZ3 975 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 CTU1Q7Z7A3 348 aaKnown RBP12.64□□□□□ -0.39
TPM1-217ENST00000559108 GTF3C6Q969F1 213 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 TRERF1Q96PN7 1200 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 MROH8Q9H579 483 aa12.64□□□□□ -0.39
TPM1-217ENST00000559108 A1CFQ9NQ94 594 aaKnown RBP12.64□□□□□ -0.39
TPM1-217ENST00000559108 RBM28Q9NW13 759 aaKnown RBP12.64□□□□□ -0.39
TPM1-217ENST00000559108 V9GY48 417 aaPredicted RBP12.64□□□□□ -0.39
TPM1-217ENST00000559108 FDX1P10109 184 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 FDPSP14324 419 aaKnown RBP12.63□□□□□ -0.39
TPM1-217ENST00000559108 ELNP15502 786 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 IFNAR1P17181 557 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 ADORA2AP29274 412 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 CCNA1P78396 465 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 CNTN2Q02246 1040 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 FBXO11Q86XK2 927 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 LZTS2Q9BRK4 669 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 GJB4Q9NTQ9 266 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 PTPN22Q9Y2R2 807 aa12.63□□□□□ -0.39
TPM1-217ENST00000559108 SOWAHBA6NEL2 793 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 SLC15A5A6NIM6 579 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 STXBP3O00186 592 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 SLC25A27O95847 323 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 CYP2B6P20813 491 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 GNAQP50148 359 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 MAP2K5Q13163 448 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 ANKRD1Q15327 319 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 ZNF792Q3KQV3 632 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 FAM133AQ8N9E0 248 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 NSUN7Q8NE18 718 aaKnown RBP12.62□□□□□ -0.39
TPM1-217ENST00000559108 CHST13Q8NET6 341 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 TRIB2Q92519 343 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 RRP36Q96EU6 259 aaKnown RBP12.62□□□□□ -0.39
TPM1-217ENST00000559108 MMP19Q99542 508 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 AMNQ9BXJ7 453 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 SLKQ9H2G2 1235 aaPredicted RBP12.62□□□□□ -0.39
TPM1-217ENST00000559108 ACAD9Q9H845 621 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 LIMCH1Q9UPQ0 1083 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 PCDHA1Q9Y5I3 950 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 ABCB11O95342 1321 aa12.62□□□□□ -0.39
TPM1-217ENST00000559108 PRPF3O43395 683 aaKnown RBP12.61□□□□□ -0.39
TPM1-217ENST00000559108 HOXC6P09630 235 aa12.61□□□□□ -0.39
TPM1-217ENST00000559108 GHRHRQ02643 423 aa12.61□□□□□ -0.39
TPM1-217ENST00000559108 BAATQ14032 418 aaPredicted RBP12.61□□□□□ -0.39
TPM1-217ENST00000559108 PFKFB3Q16875 520 aaPredicted RBP12.61□□□□□ -0.39
TPM1-217ENST00000559108 NSMFQ6X4W1 530 aa12.61□□□□□ -0.39
TPM1-217ENST00000559108 CCDC83Q8IWF9 413 aa12.61□□□□□ -0.39
TPM1-217ENST00000559108 TMX3Q96JJ7 454 aa12.61□□□□□ -0.39
TPM1-217ENST00000559108 SLC26A6Q9BXS9 759 aa12.61□□□□□ -0.39
TPM1-217ENST00000559108 MCOLN1Q9GZU1 580 aa12.61□□□□□ -0.39
TPM1-217ENST00000559108 CYP39A1Q9NYL5 469 aa12.61□□□□□ -0.39
TPM1-217ENST00000559108 CTDP1Q9Y5B0 961 aaPredicted RBP12.61□□□□□ -0.39
TPM1-217ENST00000559108 CENPFP49454 3210 aa12.61□□□□□ -0.39
TPM1-217ENST00000559108 MYH7BA7E2Y1 1941 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 KIAA1217Q5T5P2 1943 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 FCER1AP12319 257 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 HOXA13P31271 388 aaPredicted RBP12.6□□□□□ -0.39
TPM1-217ENST00000559108 HSD17B4P51659 736 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 RPS6P62753 249 aaKnown RBP12.6□□□□□ -0.39
TPM1-217ENST00000559108 IRF5Q13568 498 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 KIF22Q14807 665 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 PPP2R5BQ15173 497 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 NPY5RQ15761 445 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 TKFCQ3LXA3 575 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 HEATR3Q7Z4Q2 680 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 ABRAQ8N0Z2 381 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 SH3TC2Q8TF17 1288 aa12.6□□□□□ -0.39
TPM1-217ENST00000559108 RNF26Q9BY78 433 aaPredicted RBP12.6□□□□□ -0.39
TPM1-217ENST00000559108 DOCK5Q9H7D0 1870 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 CCDC196A0A1B0GTZ2 297 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 PTPDC1A2A3K4 754 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 MEIS2O14770 477 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 SCG2P13521 617 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 COPB2P35606 906 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 KCTD2Q14681 263 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 USP17L6PQ6QN14 398 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 CCAR1Q8IX12 1150 aaKnown RBP12.59□□□□□ -0.39
TPM1-217ENST00000559108 ANKRD35Q8N283 1001 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 TRPV1Q8NER1 839 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 SMARCC2Q8TAQ2 1214 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 SYTL5Q8TDW5 730 aaPredicted RBP12.59□□□□□ -0.39
TPM1-217ENST00000559108 SOCS4Q8WXH5 440 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 DDX11Q96FC9 970 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 MAML3Q96JK9 1138 aa12.59□□□□□ -0.39
TPM1-217ENST00000559108 APBA2Q99767 749 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms