RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CCDC163A0A0D9SF12 145 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 GLTPD2A6NH11 291 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 FAM177BA6PVY3 158 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 BBOX1O75936 387 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 SASH1O94885 1247 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 REC8O95072 547 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 IFIT1P09914 478 aaKnown RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 UQCRFS1P1P0C7P4 283 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 GYS1P13807 737 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 CNGA1P29973 690 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 PDE6BP35913 854 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 ANP32AP39687 249 aaKnown RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 RPS8P62241 208 aaKnown RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 HLTFQ14527 1009 aaKnown RBP eCLIP6.1□□□□□ -1.43
LDLR-209ENST00000558528 NFIXQ14938 502 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 DALRD3Q5D0E6 543 aaKnown RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 PLA2G2CQ5R387 149 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 GATAD2BQ8WXI9 593 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 JARID2Q92833 1246 aaPredicted RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 MFSD3Q96ES6 412 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 RBM17Q96I25 401 aaKnown RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 NEUROD6Q96NK8 337 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 SIL1Q9H173 461 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 MIR1-1HGQ9H1L0 117 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 GREM2Q9H772 168 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 ST7Q9NRC1 585 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 GNL3LQ9NVN8 582 aaKnown RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 BSDC1Q9NW68 430 aaPredicted RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 GABBR1Q9UBS5 961 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 MCM8Q9UJA3 840 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 PRR12Q9ULL5 1215 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 ZNRF3Q9ULT6 936 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 PA2G4Q9UQ80 394 aaKnown RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 TLR6Q9Y2C9 796 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 USP20Q9Y2K6 914 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 ATP8A1Q9Y2Q0 1164 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 LEMD3Q9Y2U8 911 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.1□□□□□ -1.43
LDLR-209ENST00000558528 WASF2Q9Y6W5 498 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 C5P01031 1676 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 ITGB4P16144 1822 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 A0A0G2JLW4 131 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 PDE8BO95263 885 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 SLC5A1P13866 664 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 ATP5JP18859 108 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 TFE3P19532 575 aaPredicted RBP6.09□□□□□ -1.43
LDLR-209ENST00000558528 MCCP23508 829 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 ALDH1B1P30837 517 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 MCM4P33991 863 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 SOX5P35711 763 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 CRKP46108 304 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 EPHB1P54762 984 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 RELBQ01201 579 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 KCNC4Q03721 635 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 TYRO3Q06418 890 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 TFCP2Q12800 502 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 UBE4AQ14139 1066 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 TTF1Q15361 905 aaPredicted RBP6.09□□□□□ -1.43
LDLR-209ENST00000558528 PUM3Q15397 648 aaKnown RBP6.09□□□□□ -1.43
LDLR-209ENST00000558528 TMEM67Q5HYA8 995 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 PEAR1Q5VY43 1037 aaPredicted RBP6.09□□□□□ -1.43
LDLR-209ENST00000558528 FBXW10Q5XX13 1052 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 ZSCAN25Q6NSZ9 544 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 TMED8Q6PL24 325 aaPredicted RBP6.09□□□□□ -1.43
LDLR-209ENST00000558528 CCNJLQ8IV13 435 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 FAM169BQ8N8A8 192 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 LPIN2Q92539 896 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 RPGRQ92834 1020 aaKnown RBP6.09□□□□□ -1.43
LDLR-209ENST00000558528 PMM1Q92871 262 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 RILPL2Q969X0 211 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 EAF2Q96CJ1 260 aaPredicted RBP6.09□□□□□ -1.43
LDLR-209ENST00000558528 OTUD5Q96G74 571 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 ZNF512BQ96KM6 892 aaPredicted RBP6.09□□□□□ -1.43
LDLR-209ENST00000558528 BRIP1Q9BX63 1249 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 RBSNQ9H1K0 784 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 SRP68Q9UHB9 627 aaKnown RBP6.09□□□□□ -1.43
LDLR-209ENST00000558528 PTCH2Q9Y6C5 1203 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 GJA3Q9Y6H8 435 aa6.09□□□□□ -1.43
LDLR-209ENST00000558528 SALL3Q9BXA9 1300 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 MKI67P46013 3256 aaKnown RBP6.08□□□□□ -1.44
LDLR-209ENST00000558528 A0A1B0GTH6 734 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 A0A1B0GUL7 405 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 RASSF10A6NK89 507 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 FBXO24O75426 580 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 ASMTLO95671 621 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 BPNT1O95861 308 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 CELA3AP09093 270 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 SDSP20132 328 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 ITPKAP23677 461 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 FXR1P51114 621 aaKnown RBP eCLIP6.08□□□□□ -1.44
LDLR-209ENST00000558528 SSRP1Q08945 709 aaKnown RBP6.08□□□□□ -1.44
LDLR-209ENST00000558528 BIRC2Q13490 618 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 GRAPQ13588 217 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 ATP2B3Q16720 1220 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 TKFCQ3LXA3 575 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 CAVIN4Q5BKX8 364 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 TTC39AQ5SRH9 613 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 LARP1BQ659C4 914 aaKnown RBP6.08□□□□□ -1.44
LDLR-209ENST00000558528 SCARA3Q6AZY7 606 aa6.08□□□□□ -1.44
LDLR-209ENST00000558528 KIAA1211Q6ZU35 1233 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms