RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 LCORLQ8N3X6 602 aa14.86□□□□□ -0.03
SHMT2-230ENST00000557427 GPATCH3Q96I76 525 aa14.86□□□□□ -0.03
SHMT2-230ENST00000557427 TBC1D32Q96NH3 1257 aa14.86□□□□□ -0.03
SHMT2-230ENST00000557427 RIPK3Q9Y572 518 aa14.86□□□□□ -0.03
SHMT2-230ENST00000557427 ASTN1O14525 1302 aa14.86□□□□□ -0.03
SHMT2-230ENST00000557427 USP34Q70CQ2 3546 aa14.85□□□□□ -0.03
SHMT2-230ENST00000557427 PRKAB2O43741 272 aa14.85□□□□□ -0.03
SHMT2-230ENST00000557427 B4GALT4O60513 344 aa14.85□□□□□ -0.03
SHMT2-230ENST00000557427 PTGS1P23219 599 aa14.85□□□□□ -0.03
SHMT2-230ENST00000557427 PLEKHM2Q8IWE5 1019 aa14.85□□□□□ -0.03
SHMT2-230ENST00000557427 RPUSD2Q8IZ73 545 aaKnown RBP14.85□□□□□ -0.03
SHMT2-230ENST00000557427 OTUD7AQ8TE49 926 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-230ENST00000557427 SDR42E1Q8WUS8 393 aa14.85□□□□□ -0.03
SHMT2-230ENST00000557427 KATNBL1Q9H079 304 aa14.85□□□□□ -0.03
SHMT2-230ENST00000557427 MCM9Q9NXL9 1143 aa14.85□□□□□ -0.03
SHMT2-230ENST00000557427 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-230ENST00000557427 MCM3APO60318 1980 aa14.84□□□□□ -0.03
SHMT2-230ENST00000557427 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-230ENST00000557427 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-230ENST00000557427 WDR46O15213 610 aaKnown RBP14.84□□□□□ -0.03
SHMT2-230ENST00000557427 EIF5BO60841 1220 aaKnown RBP14.84□□□□□ -0.03
SHMT2-230ENST00000557427 MBD4O95243 580 aa14.84□□□□□ -0.03
SHMT2-230ENST00000557427 AKR1B1P15121 316 aa14.84□□□□□ -0.03
SHMT2-230ENST00000557427 ITGA7Q13683 1181 aa14.84□□□□□ -0.03
SHMT2-230ENST00000557427 ZSCAN25Q6NSZ9 544 aa14.84□□□□□ -0.03
SHMT2-230ENST00000557427 TMEM179Q6ZVK1 233 aa14.84□□□□□ -0.03
SHMT2-230ENST00000557427 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-230ENST00000557427 SPC25Q9HBM1 224 aa14.84□□□□□ -0.03
SHMT2-230ENST00000557427 PPP1R9AQ9ULJ8 1098 aa14.84□□□□□ -0.03
SHMT2-230ENST00000557427 CYP2D6P10635 497 aa14.83□□□□□ -0.04
SHMT2-230ENST00000557427 IL9P15248 144 aa14.83□□□□□ -0.04
SHMT2-230ENST00000557427 UBE3CQ15386 1083 aa14.83□□□□□ -0.04
SHMT2-230ENST00000557427 ZNF467Q7Z7K2 595 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-230ENST00000557427 KCNH6Q9H252 994 aa14.83□□□□□ -0.04
SHMT2-230ENST00000557427 COL4A4P53420 1690 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-230ENST00000557427 ZNF318Q5VUA4 2279 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 SCN5AQ14524 2016 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 POTEB3A0JP26 581 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 PSMC6P62333 389 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 ICA1Q05084 483 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 TTC22Q5TAA0 569 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 POTEBQ6S5H4 581 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 DEFB128Q7Z7B8 93 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 DDX11Q96FC9 970 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 DYNLL2Q96FJ2 89 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 PUS7LQ9H0K6 701 aaKnown RBP14.82□□□□□ -0.04
SHMT2-230ENST00000557427 ABHD16BQ9H3Z7 469 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 ARHGEF10LQ9HCE6 1279 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 DCP1AQ9NPI6 582 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-230ENST00000557427 SLC4A4Q9Y6R1 1079 aa14.82□□□□□ -0.04
SHMT2-230ENST00000557427 ALADP13716 330 aa14.81□□□□□ -0.04
SHMT2-230ENST00000557427 CSPP1Q1MSJ5 1256 aa14.81□□□□□ -0.04
SHMT2-230ENST00000557427 OSBPL3Q9H4L5 887 aa14.81□□□□□ -0.04
SHMT2-230ENST00000557427 UBE2ZQ9H832 354 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-230ENST00000557427 GNEQ9Y223 722 aaKnown RBP14.81□□□□□ -0.04
SHMT2-230ENST00000557427 CYP2D7A0A087X1C5 515 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 RNF113AO15541 343 aaKnown RBP14.8□□□□□ -0.04
SHMT2-230ENST00000557427 SSTR3P32745 418 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-230ENST00000557427 COPB2P35606 906 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 LEXMQ3ZCV2 418 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 FAM83BQ5T0W9 1011 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 SNRNP48Q6IEG0 339 aaKnown RBP14.8□□□□□ -0.04
SHMT2-230ENST00000557427 ARMCX2Q7L311 632 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 HERC6Q8IVU3 1022 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 CCDC144CPQ8IYA2 1237 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 KBTBD3Q8NAB2 608 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 PHOSPHO2Q8TCD6 241 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 GDPD5Q8WTR4 605 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 SLC9A7Q96T83 725 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 DAXXQ9UER7 740 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-230ENST00000557427 NAV1Q8NEY1 1877 aa14.8□□□□□ -0.04
SHMT2-230ENST00000557427 CFAP54Q96N23 3096 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 LCHNA4D1U4 455 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 USP17L12C9JPN9 530 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 USP17L21D6R901 530 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 CDC45O75419 566 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 CABYRO75952 493 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 PFKMP08237 780 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 CYP2C9P11712 490 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 EEF2P13639 858 aaKnown RBP14.79□□□□□ -0.04
SHMT2-230ENST00000557427 GSPT1P15170 499 aaKnown RBP14.79□□□□□ -0.04
SHMT2-230ENST00000557427 MX1P20591 662 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 TMEM63BQ5T3F8 832 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 TTC41PQ6P2S7 1318 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 HFE2Q6ZVN8 426 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 TEX13BQ9BXU2 312 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 C22orf23Q9BZE7 217 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 ATP8A2Q9NTI2 1148 aa14.79□□□□□ -0.04
SHMT2-230ENST00000557427 TRMT13Q9NUP7 481 aaKnown RBP14.79□□□□□ -0.04
SHMT2-230ENST00000557427 SALL3Q9BXA9 1300 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 DCXO43602 365 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 KCNA5P22460 613 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 MFAP1P55081 439 aaKnown RBP14.78□□□□□ -0.04
SHMT2-230ENST00000557427 TNFAIP2Q03169 654 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 BECN1Q14457 450 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 FSCN1Q16658 493 aaKnown RBP14.78□□□□□ -0.04
SHMT2-230ENST00000557427 PI4K2BQ8TCG2 481 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 OSBP2Q969R2 916 aa14.78□□□□□ -0.04
SHMT2-230ENST00000557427 STRBPQ96SI9 672 aaKnown RBP14.78□□□□□ -0.04
SHMT2-230ENST00000557427 NUP88Q99567 741 aaPredicted RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms