RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SHCBP1Q8NEM2 672 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 SMARCC2Q8TAQ2 1214 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 TBC1D5Q92609 795 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 TRIM47Q96LD4 638 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 TSHZ2Q9NRE2 1034 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 RNF146Q9NTX7 359 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 STXBP3O00186 592 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 CDKL5O76039 1030 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 SLC25A27O95847 323 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 SCG2P13521 617 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 PSMC4P43686 418 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 LBX1P52954 281 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 WDR78Q5VTH9 848 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 GPR142Q7Z601 462 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 TRIM22Q8IYM9 498 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 LLPHQ9BRT6 129 aaKnown RBP14.81□□□□□ -0.04
SHMT2-227ENST00000557269 MROH8Q9H579 483 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 GJB4Q9NTQ9 266 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 ORC3Q9UBD5 711 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-227ENST00000557269 ABCB11O95342 1321 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 STK36Q9NRP7 1315 aa14.81□□□□□ -0.04
SHMT2-227ENST00000557269 ADAMTS3O15072 1205 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 MAPK4P31152 587 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 AKAP17AQ02040 695 aaKnown RBP14.8□□□□□ -0.04
SHMT2-227ENST00000557269 TKFCQ3LXA3 575 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 PLEKHH3Q7Z736 793 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 HSCBQ8IWL3 235 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 CHST13Q8NET6 341 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 PURBQ96QR8 312 aaKnown RBP14.8□□□□□ -0.04
SHMT2-227ENST00000557269 ACAD9Q9H845 621 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 FOXD4L1Q9NU39 408 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 BARHL2Q9NY43 387 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 VPS54Q9P1Q0 977 aa14.8□□□□□ -0.04
SHMT2-227ENST00000557269 TNPO2O14787 897 aaKnown RBP14.79□□□□□ -0.04
SHMT2-227ENST00000557269 DEXIO95424 95 aa14.79□□□□□ -0.04
SHMT2-227ENST00000557269 MYH6P13533 1939 aa14.79□□□□□ -0.04
SHMT2-227ENST00000557269 PTPREP23469 700 aa14.79□□□□□ -0.04
SHMT2-227ENST00000557269 CTCFP49711 727 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-227ENST00000557269 FCGRTP55899 365 aa14.79□□□□□ -0.04
SHMT2-227ENST00000557269 MORN1Q5T089 497 aa14.79□□□□□ -0.04
SHMT2-227ENST00000557269 CCAR1Q8IX12 1150 aaKnown RBP14.79□□□□□ -0.04
SHMT2-227ENST00000557269 A1CFQ9NQ94 594 aaKnown RBP14.79□□□□□ -0.04
SHMT2-227ENST00000557269 GJD2Q9UKL4 321 aa14.79□□□□□ -0.04
SHMT2-227ENST00000557269 PNMA2Q9UL42 364 aa14.79□□□□□ -0.04
SHMT2-227ENST00000557269 GABRQQ9UN88 632 aa14.79□□□□□ -0.04
SHMT2-227ENST00000557269 MRPL11Q9Y3B7 192 aaKnown RBP14.79□□□□□ -0.04
SHMT2-227ENST00000557269 MGAMO43451 1857 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 COBLO75128 1261 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 PGK2P07205 417 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 COPB2P35606 906 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 FOSBP53539 338 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 NAPAP54920 295 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 BAATQ14032 418 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-227ENST00000557269 NSMFQ6X4W1 530 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 SLC30A10Q6XR72 485 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.78□□□□□ -0.04
SHMT2-227ENST00000557269 ERO1AQ96HE7 468 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 MMP19Q99542 508 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 ALG1Q9BT22 464 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 CYP39A1Q9NYL5 469 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 COL20A1Q9P218 1284 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 RBM27Q9P2N5 1060 aaKnown RBP14.78□□□□□ -0.04
SHMT2-227ENST00000557269 FBXO40Q9UH90 709 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 PLXNB2O15031 1838 aa14.78□□□□□ -0.04
SHMT2-227ENST00000557269 FCER1AP12319 257 aa14.77□□□□□ -0.05
SHMT2-227ENST00000557269 ADORA2AP29274 412 aa14.77□□□□□ -0.05
SHMT2-227ENST00000557269 HOXA13P31271 388 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-227ENST00000557269 CNTN2Q02246 1040 aa14.77□□□□□ -0.05
SHMT2-227ENST00000557269 PRKCZQ05513 592 aa14.77□□□□□ -0.05
SHMT2-227ENST00000557269 GRB14Q14449 540 aa14.77□□□□□ -0.05
SHMT2-227ENST00000557269 KIF22Q14807 665 aa14.77□□□□□ -0.05
SHMT2-227ENST00000557269 USP6NLQ92738 828 aa14.77□□□□□ -0.05
SHMT2-227ENST00000557269 CWC22Q9HCG8 908 aaKnown RBP14.77□□□□□ -0.05
SHMT2-227ENST00000557269 KCNJ14Q9UNX9 436 aa14.77□□□□□ -0.05
SHMT2-227ENST00000557269 ASTN1O14525 1302 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 DNAJC25-GNG10A0A024R161 153 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 SMCO2A6NFE2 343 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 SLC15A5A6NIM6 579 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 hCG_1984214I3L0E3 225 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 MEIS2O14770 477 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 STRNO43815 780 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 CFBP00751 764 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 CALML3P27482 149 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 GJB2P29033 226 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 HSD17B4P51659 736 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 RPS6P62753 249 aaKnown RBP14.76□□□□□ -0.05
SHMT2-227ENST00000557269 GHRHRQ02643 423 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 TRAF1Q13077 416 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 KCTD2Q14681 263 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 NPY5RQ15761 445 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 UBE2SQ16763 222 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 USP17L6PQ6QN14 398 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 RNF207Q6ZRF8 634 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 OTOP1Q7RTM1 612 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 ABRAQ8N0Z2 381 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 ANKRD35Q8N283 1001 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 ZNF713Q8N859 430 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-227ENST00000557269 SPRYD3Q8NCJ5 442 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 FGD4Q96M96 766 aa14.76□□□□□ -0.05
SHMT2-227ENST00000557269 PSTPIP2Q9H939 334 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms