RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 C22orf23Q9BZE7 217 aa13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 RIOX1Q9H6W3 641 aa13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 RBM28Q9NW13 759 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 PTPDC1A2A3K4 754 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 POTEB2H3BUK9 544 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 CYTH3O43739 400 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 HOXC6P09630 235 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 SLC35G1Q2M3R5 365 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 MFSD14CQ5VZR4 134 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 SRBD1Q8N5C6 995 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 ZNF333Q96JL9 665 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 TMEM106CQ9BVX2 250 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 A1CFQ9NQ94 594 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 SEC63Q9UGP8 760 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 MYH6P13533 1939 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 ZNFX1Q9P2E3 1918 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 ABCB11O95342 1321 aa13.28□□□□□ -0.28
CCDC88C-212ENST00000556767 PNMA6FA0A0J9YX94 578 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 CCDC196A0A1B0GTZ2 297 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 NFIBO00712 420 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 CALML3P27482 149 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 SMARCA1P28370 1054 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 NEK4P51957 841 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 TRIM32Q13049 653 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 TOB2Q14106 344 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 MTFR1Q15390 333 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 RNF207Q6ZRF8 634 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 TMTC3Q6ZXV5 915 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 NOL8Q76FK4 1167 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 FBXL16Q8N461 479 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 SPZ1Q9BXG8 430 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 AGXT2Q9BYV1 514 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 FLRT1Q9NZU1 646 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 MRPL11Q9Y3B7 192 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 PCDHA1Q9Y5I3 950 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 PFASO15067 1338 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 ZNF236Q9UL36 1845 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 SMCHD1A6NHR9 2005 aa13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 BAZ2BQ9UIF8 2168 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-212ENST00000556767 hCG_1642624A0A1W2PR95 340 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 CCL5P13501 91 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 PRKAR2AP13861 404 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 CYP2C19P33261 490 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 RCAN1P53805 252 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 SOX10P56693 466 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 CCT2P78371 535 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 TRAF1Q13077 416 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 STK3Q13188 491 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 BAATQ14032 418 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 ZNF792Q3KQV3 632 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 CLEC4DQ8WXI8 215 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 MTMR8Q96EF0 704 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 MAML3Q96JK9 1138 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 RNF208Q9H0X6 261 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 UNC93B1Q9H1C4 597 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 CYP39A1Q9NYL5 469 aa13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 DIS3Q9Y2L1 958 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-212ENST00000556767 DNAJC25-GNG10A0A024R161 153 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 PPP1R11O60927 126 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 CNGA1P29973 690 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 PDIA3P30101 505 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 CDC27P30260 824 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 ADD1P35611 737 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 AK2P54819 239 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 CNTN2Q02246 1040 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 PPP2R5BQ15173 497 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 ANKRD1Q15327 319 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 OLFML2BQ68BL8 750 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 SLC30A10Q6XR72 485 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 MCF2L2Q86YR7 1114 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 HMX1Q9NP08 348 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 PLXNA1Q9UIW2 1896 aa13.25□□□□□ -0.29
CCDC88C-212ENST00000556767 CNTNAP5Q8WYK1 1306 aa13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 CPLX1O14810 134 aa13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 CFBP00751 764 aa13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 RPS6P62753 249 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 CACNB2Q08289 660 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 HEATR3Q7Z4Q2 680 aa13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 FAM133AQ8N9E0 248 aa13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 IL17RAQ96F46 866 aa13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 PURBQ96QR8 312 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 TINF2Q9BSI4 451 aa13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 NCOA5Q9HCD5 579 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 FAM217BQ9NTX9 383 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 ADD3Q9UEY8 706 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 V9GY48 417 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-212ENST00000556767 RPTORQ8N122 1335 aa13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 SOWAHBA6NEL2 793 aa13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 CCND3P30281 292 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 RBM25P49756 843 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 EVCP57679 992 aa13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 AKAP17AQ02040 695 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 PRAMEF19Q5SWL8 479 aa13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 TBC1D5Q92609 795 aa13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 ZNF274Q96GC6 653 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 DEFB118Q96PH6 123 aa13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 BACH2Q9BYV9 841 aa13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.23□□□□□ -0.29
CCDC88C-212ENST00000556767 ALDH8A1Q9H2A2 487 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms