RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 PCDHA1Q9Y5I3 950 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 DNM1Q05193 864 aaKnown RBP12.39□□□□□ -0.43
TDP1-211ENST00000555178 UBE2SQ16763 222 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 LBX2Q6XYB7 198 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 ANKRD23Q86SG2 305 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 FBXO11Q86XK2 927 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 IFNL1Q8IU54 200 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 DIS3L2Q8IYB7 885 aaKnown RBP12.39□□□□□ -0.43
TDP1-211ENST00000555178 CCDC102AQ96A19 550 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 PGBD1Q96JS3 809 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 DDX49Q9Y6V7 483 aaKnown RBP12.39□□□□□ -0.43
TDP1-211ENST00000555178 NFIBO00712 420 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 WNT7AO00755 349 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 NAPAP54920 295 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 PLS1Q14651 629 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 CLEC4DQ8WXI8 215 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 MANSC4A6NHS7 340 aaPredicted RBP12.38□□□□□ -0.43
TDP1-211ENST00000555178 ICAM1P05362 532 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 ALAS1P13196 640 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 SNRNP48Q6IEG0 339 aaKnown RBP12.38□□□□□ -0.43
TDP1-211ENST00000555178 USP17L6PQ6QN14 398 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 ANKRD13CQ8N6S4 541 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 HOXC10Q9NYD6 342 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 CPA4Q9UI42 421 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 CCPG1Q9ULG6 757 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 CNPY2Q9Y2B0 182 aa12.38□□□□□ -0.43
TDP1-211ENST00000555178 PLXNB2O15031 1838 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 MCM3APO60318 1980 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 ADGRA2Q96PE1 1338 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 SMCO2A6NFE2 343 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 HOXA13P31271 388 aaPredicted RBP12.37□□□□□ -0.43
TDP1-211ENST00000555178 TM4SF4P48230 202 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 NLRP5P59047 1200 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 C1QTNF8P60827 252 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 CAP1Q01518 475 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 NFKBIBQ15653 356 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 AMNQ9BXJ7 453 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 PORCNQ9H237 461 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 RBM27Q9P2N5 1060 aaKnown RBP12.37□□□□□ -0.43
TDP1-211ENST00000555178 MGAMO43451 1857 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 HTTP42858 3142 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 M0R2N6 131 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 EDIL3O43854 480 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 ZBED4O75132 1171 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 TNFRSF25Q93038 417 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 MOV10L1Q9BXT6 1211 aaKnown RBP12.37□□□□□ -0.43
TDP1-211ENST00000555178 COL20A1Q9P218 1284 aa12.37□□□□□ -0.43
TDP1-211ENST00000555178 TFIP11Q9UBB9 837 aaKnown RBP12.37□□□□□ -0.43
TDP1-211ENST00000555178 BIN2Q9UBW5 565 aaPredicted RBP12.37□□□□□ -0.43
TDP1-211ENST00000555178 MEIS2O14770 477 aa12.36□□□□□ -0.43
TDP1-211ENST00000555178 NCLP19338 710 aaKnown RBP12.36□□□□□ -0.43
TDP1-211ENST00000555178 OSBPP22059 807 aa12.36□□□□□ -0.43
TDP1-211ENST00000555178 CEBPZQ03701 1054 aaKnown RBP12.36□□□□□ -0.43
TDP1-211ENST00000555178 CRHR2Q13324 411 aa12.36□□□□□ -0.43
TDP1-211ENST00000555178 NBR1Q14596 966 aa12.36□□□□□ -0.43
TDP1-211ENST00000555178 ZMYND12Q9H0C1 365 aa12.36□□□□□ -0.43
TDP1-211ENST00000555178 PLXNA1Q9UIW2 1896 aa12.36□□□□□ -0.43
TDP1-211ENST00000555178 THSD7BQ9C0I4 1608 aa12.36□□□□□ -0.43
TDP1-211ENST00000555178 FIBPO43427 364 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 XBP1P17861 261 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 U2AF2P26368 475 aaKnown RBP eCLIP12.35□□□□□ -0.43
TDP1-211ENST00000555178 KRT2P35908 639 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 STAT3P40763 770 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 GNL2Q13823 731 aaKnown RBP12.35□□□□□ -0.43
TDP1-211ENST00000555178 TAF1CQ15572 869 aaPredicted RBP12.35□□□□□ -0.43
TDP1-211ENST00000555178 JAKMIP3Q5VZ66 844 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 ZFP91Q96JP5 570 aaPredicted RBP12.35□□□□□ -0.43
TDP1-211ENST00000555178 SPATC1LQ9H0A9 340 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 PCDHA6Q9UN73 950 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 PCDHA8Q9Y5H6 950 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 MYPNQ86TC9 1320 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 CTGFP29279 349 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 NOGQ13253 232 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 SLC30A10Q6XR72 485 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 CLEC17AQ6ZS10 378 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 NOSTRINQ8IVI9 506 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 SMCR8Q8TEV9 937 aaPredicted RBP12.35□□□□□ -0.43
TDP1-211ENST00000555178 TRERF1Q96PN7 1200 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 ZSCAN16Q9H4T2 348 aaPredicted RBP12.35□□□□□ -0.43
TDP1-211ENST00000555178 EFCC1Q9HA90 598 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 SH3GLB2Q9NR46 395 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 RNF146Q9NTX7 359 aa12.35□□□□□ -0.43
TDP1-211ENST00000555178 TBC1D8O95759 1140 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 CFBP00751 764 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 HSPA6P17066 643 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 MCM4P33991 863 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 ERVK-9P63128 1117 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 ERVK-24P63145 666 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 SAFBQ15424 915 aaKnown RBP eCLIP12.34□□□□□ -0.43
TDP1-211ENST00000555178 TPRNQ4KMQ1 711 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 MYSM1Q5VVJ2 828 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 BLIDQ8IZY5 108 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 GBP4Q96PP9 640 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 USP28Q96RU2 1077 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 PCDHA4Q9UN74 947 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 SLC45A1Q9Y2W3 748 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 ATP2A1O14983 1001 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 ERCC3P19447 782 aa12.34□□□□□ -0.43
TDP1-211ENST00000555178 CLK2P49760 499 aaKnown RBP12.34□□□□□ -0.43
TDP1-211ENST00000555178 TOB1P50616 345 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms