RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 JMJD4Q9H9V9 463 aa13.53□□□□□ -0.24
CCDC88C-208ENST00000554165 SH2B2O14492 632 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 SEPT4O43236 478 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 DHX16O60231 1041 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 PPP1R11O60927 126 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 MYCNP04198 464 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 CPA1P15085 419 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 PTGS1P23219 599 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 IRX5P78411 483 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 TROAPQ12815 778 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 GRM4Q14833 912 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 QRICH1Q2TAL8 776 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 GJC2Q5T442 439 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 MAMDC4Q6UXC1 1216 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 SLC30A10Q6XR72 485 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 CCDC144CPQ8IYA2 1237 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 DPF3Q92784 378 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 ZHX1Q9UKY1 873 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 PFASO15067 1338 aa13.52□□□□□ -0.25
CCDC88C-208ENST00000554165 LCTP09848 1927 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 ERICH2A1L162 156 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 ADCY6O43306 1168 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 CYTH3O43739 400 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 RXRAP19793 462 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 MCM5P33992 734 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 SART3Q15020 963 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 ARMCX2Q7L311 632 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 NECAB2Q7Z6G3 386 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 NUP133Q8WUM0 1156 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 PIBF1Q8WXW3 757 aa13.51□□□□□ -0.25
CCDC88C-208ENST00000554165 FRMPD3Q5JV73 1810 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 WDR19Q8NEZ3 1342 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 SYNGAP1Q96PV0 1343 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 PTPDC1A2A3K4 754 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 H0YGN5 161 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 PGK1P00558 417 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 CALML3P27482 149 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 ACVR2BQ13705 512 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 TMEM63BQ5T3F8 832 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 EEPD1Q7L9B9 569 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 CATIPQ7Z7H3 387 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 ZNF467Q7Z7K2 595 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 ZNF654Q8IZM8 581 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 ANKLE1Q8NAG6 615 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 KATNBL1Q9H079 304 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 C11orf49Q9H6J7 331 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 CNPY2Q9Y2B0 182 aa13.5□□□□□ -0.25
CCDC88C-208ENST00000554165 ALPK3Q96L96 1907 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 OPLAHO14841 1288 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 COL6A1P12109 1028 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 RPS6P62753 249 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 EXOSC10Q01780 885 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 PRPF38BQ5VTL8 546 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 RNF20Q5VTR2 975 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 NFXL1Q6ZNB6 911 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 FBXO11Q86XK2 927 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 HOMER1Q86YM7 354 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 CMTR1Q8N1G2 835 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 KCNB2Q92953 911 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 MTMR8Q96EF0 704 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 NEK1Q96PY6 1258 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 PIGSQ96S52 555 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 PDGFCQ9NRA1 345 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 COL20A1Q9P218 1284 aa13.49□□□□□ -0.25
CCDC88C-208ENST00000554165 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 MSCO60682 206 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 PLEKHA8P1O95397 391 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 HSPA4P34932 840 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 LRRC41Q15345 812 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 LRRC26Q2I0M4 334 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 CCDC144BQ3MJ40 725 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 TSGA10IPQ3SY00 556 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 RNF207Q6ZRF8 634 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 FBXO16Q8IX29 292 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 MSL3Q8N5Y2 521 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 FERMT2Q96AC1 680 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 TMEM87BQ96K49 555 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 HTATIP2Q9BUP3 242 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 SENP6Q9GZR1 1112 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 RIOX1Q9H6W3 641 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 XPNPEP3Q9NQH7 507 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 NRBP1Q9UHY1 535 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 BRPF3Q9ULD4 1205 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 SNX14Q9Y5W7 946 aa13.48□□□□□ -0.25
CCDC88C-208ENST00000554165 MYH6P13533 1939 aa13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 hCG_1642624A0A1W2PR95 340 aa13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 MYADML2A6NDP7 307 aa13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 CCDC69A6NI79 296 aa13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 RARBP10826 455 aa13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 AKR1A1P14550 325 aa13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 ALDH5A1P51649 535 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 ATN1P54259 1190 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 DHX32Q7L7V1 743 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 C7orf61Q8IZ16 206 aa13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 SRBD1Q8N5C6 995 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 JAKMIP1Q96N16 626 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 ABHD16BQ9H3Z7 469 aa13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 FAM184BQ9ULE4 1060 aa13.47□□□□□ -0.25
CCDC88C-208ENST00000554165 DNAH12Q6ZR08 3092 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms