RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 MTMR1Q13613 665 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 ACBD5Q5T8D3 534 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-210ENST00000552045 PIK3R6Q5UE93 754 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 PAOXQ6QHF9 649 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 RSPO2Q6UXX9 243 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-210ENST00000552045 FAM214BQ7L5A3 538 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 ANKLE2Q86XL3 938 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 PPIL6Q8IXY8 311 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 ENOX1Q8TC92 643 aaKnown RBP8.35□□□□□ -1.07
LIMA1-210ENST00000552045 FRS2Q8WU20 508 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 USP7Q93009 1102 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 WNK4Q96J92 1243 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 TTC1Q99614 292 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 ORAI3Q9BRQ5 295 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 SHISA3A0PJX4 238 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 AURKAO14965 403 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 APBA3O96018 575 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 CD3EP07766 207 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 FAM87AP0C7U9 286 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 BPIP17213 487 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 KCNA6P17658 529 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 NFE2Q16621 373 aaPredicted RBP8.34□□□□□ -1.07
LIMA1-210ENST00000552045 CRTC3Q6UUV7 619 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 ALYREFQ86V81 257 aaKnown RBP8.34□□□□□ -1.07
LIMA1-210ENST00000552045 SPATS2Q86XZ4 545 aaKnown RBP8.34□□□□□ -1.07
LIMA1-210ENST00000552045 OR2W6PQ8NHA6 318 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 NPLOC4Q8TAT6 608 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 PI4K2BQ8TCG2 481 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 ZFYVE21Q9BQ24 234 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 POLR3GLQ9BT43 218 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 HDAC8Q9BY41 377 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 KCNF1Q9H3M0 494 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 GPRC5CQ9NQ84 441 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 NPFFR2Q9Y5X5 522 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 BACE2Q9Y5Z0 518 aa8.34□□□□□ -1.07
LIMA1-210ENST00000552045 C2orf71A6NGG8 1288 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 COL8A1P27658 744 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 SCNN1BP51168 640 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 MCL1Q07820 350 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 ADGRE1Q14246 886 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 MBTPS1Q14703 1052 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 TESK1Q15569 626 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 ABHD17CQ6PCB6 329 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 C22orf34Q6ZV56 151 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 DDX53Q86TM3 631 aaKnown RBP8.33□□□□□ -1.08
LIMA1-210ENST00000552045 MTDHQ86UE4 582 aaKnown RBP8.33□□□□□ -1.08
LIMA1-210ENST00000552045 KIF18BQ86Y91 864 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 IFNL3Q8IZI9 196 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 DAGLBQ8NCG7 672 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 MEGF10Q96KG7 1140 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 C8orf48Q96LL4 319 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 PHF20Q9BVI0 1012 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 IFT22Q9H7X7 185 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 GEMIN8Q9NWZ8 242 aaKnown RBP8.33□□□□□ -1.08
LIMA1-210ENST00000552045 SAMD15Q9P1V8 674 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 PCDHA8Q9Y5H6 950 aa8.33□□□□□ -1.08
LIMA1-210ENST00000552045 ARID4BQ4LE39 1312 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 CCDC194A0A1B0GVG4 234 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 PRR33A8MZF0 331 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 ARNTLO00327 626 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 NEMP1O14524 444 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 MEFVO15553 781 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 ZEB2O60315 1214 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 ZNF865P0CJ78 1059 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 NOP2P46087 812 aaKnown RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 GPR85P60893 370 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 TNK2Q07912 1038 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 ITKQ08881 620 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 CLEC16AQ2KHT3 1053 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 BEND4Q6ZU67 534 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 ZNF655Q8N720 491 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 PIWIL2Q8TC59 973 aaKnown RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 TSR2Q969E8 191 aaKnown RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 CCDC136Q96JN2 1154 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 HEXIM2Q96MH2 286 aaKnown RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 FCRL3Q96P31 734 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 PUS7LQ9H0K6 701 aaKnown RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 GPR27Q9NS67 375 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 GTF2IRD1Q9UHL9 959 aa8.32□□□□□ -1.08
LIMA1-210ENST00000552045 TMEFF2Q9UIK5 374 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-210ENST00000552045 ARVCFO00192 962 aa8.31□□□□□ -1.08
LIMA1-210ENST00000552045 IGF2BP3O00425 579 aaKnown RBP eCLIP8.31□□□□□ -1.08
LIMA1-210ENST00000552045 IFNGR1P15260 489 aa8.31□□□□□ -1.08
LIMA1-210ENST00000552045 NEK2P51955 445 aa8.31□□□□□ -1.08
LIMA1-210ENST00000552045 TBX4P57082 545 aa8.31□□□□□ -1.08
LIMA1-210ENST00000552045 TMPRSS15P98073 1019 aa8.31□□□□□ -1.08
LIMA1-210ENST00000552045 E4F1Q66K89 784 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-210ENST00000552045 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.31□□□□□ -1.08
LIMA1-210ENST00000552045 MTMR8Q96EF0 704 aa8.31□□□□□ -1.08
LIMA1-210ENST00000552045 GPR62Q9BZJ7 368 aa8.31□□□□□ -1.08
LIMA1-210ENST00000552045 GABBR1Q9UBS5 961 aa8.31□□□□□ -1.08
LIMA1-210ENST00000552045 CAPN6Q9Y6Q1 641 aa8.31□□□□□ -1.08
LIMA1-210ENST00000552045 CBX4O00257 560 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 TSPAN6O43657 245 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 GLRX3O76003 335 aaKnown RBP8.3□□□□□ -1.08
LIMA1-210ENST00000552045 MAP4K4O95819 1239 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-210ENST00000552045 SRFP11831 508 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 BMP8BP34820 402 aa8.3□□□□□ -1.08
LIMA1-210ENST00000552045 LTBRP36941 435 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms