RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 SLC9C2Q5TAH2 1124 aa17.42■□□□□ 0.38
VPS29-209ENST00000551655 HFE2Q6ZVN8 426 aa17.42■□□□□ 0.38
VPS29-209ENST00000551655 FTOQ9C0B1 505 aaKnown RBP eCLIP17.42■□□□□ 0.38
VPS29-209ENST00000551655 AP5M1Q9H0R1 490 aa17.42■□□□□ 0.38
VPS29-209ENST00000551655 HOMER2Q9NSB8 354 aa17.42■□□□□ 0.38
VPS29-209ENST00000551655 ZNF536O15090 1300 aa17.42■□□□□ 0.38
VPS29-209ENST00000551655 TNKSO95271 1327 aa17.42■□□□□ 0.38
VPS29-209ENST00000551655 SOWAHBA6NEL2 793 aa17.41■□□□□ 0.38
VPS29-209ENST00000551655 DCXO43602 365 aa17.41■□□□□ 0.38
VPS29-209ENST00000551655 EEPD1Q7L9B9 569 aa17.41■□□□□ 0.38
VPS29-209ENST00000551655 PHOSPHO2Q8TCD6 241 aa17.41■□□□□ 0.38
VPS29-209ENST00000551655 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.41■□□□□ 0.38
VPS29-209ENST00000551655 GREB1LQ9C091 1923 aaPredicted RBP17.41■□□□□ 0.38
VPS29-209ENST00000551655 KIF28PB7ZC32 967 aa17.4■□□□□ 0.38
VPS29-209ENST00000551655 FBXO16Q8IX29 292 aaPredicted RBP17.4■□□□□ 0.38
VPS29-209ENST00000551655 KIFC2Q96AC6 838 aa17.4■□□□□ 0.38
VPS29-209ENST00000551655 CCDC17Q96LX7 622 aa17.4■□□□□ 0.38
VPS29-209ENST00000551655 C1orf115Q9H7X2 142 aa17.4■□□□□ 0.38
VPS29-209ENST00000551655 KANSL2Q9H9L4 492 aa17.4■□□□□ 0.38
VPS29-209ENST00000551655 SUGCTQ9HAC7 445 aa17.4■□□□□ 0.38
VPS29-209ENST00000551655 TCRBV5S4A2TA0A5A2 114 aa17.39■□□□□ 0.37
VPS29-209ENST00000551655 POTEB3A0JP26 581 aa17.39■□□□□ 0.37
VPS29-209ENST00000551655 H3BQ06 376 aaPredicted RBP17.39■□□□□ 0.37
VPS29-209ENST00000551655 NDUFB10O96000 172 aa17.39■□□□□ 0.37
VPS29-209ENST00000551655 POTEBQ6S5H4 581 aa17.39■□□□□ 0.37
VPS29-209ENST00000551655 C16orf86Q6ZW13 317 aa17.39■□□□□ 0.37
VPS29-209ENST00000551655 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.39■□□□□ 0.37
VPS29-209ENST00000551655 FAM133AQ8N9E0 248 aa17.39■□□□□ 0.37
VPS29-209ENST00000551655 SSH3Q8TE77 659 aa17.39■□□□□ 0.37
VPS29-209ENST00000551655 SIP14410 1827 aa17.39■□□□□ 0.37
VPS29-209ENST00000551655 CACNA1AO00555 2505 aa17.39■□□□□ 0.37
VPS29-209ENST00000551655 GRXCR2A6NFK2 248 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 ATP2A1O14983 1001 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 ZEB2O60315 1214 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 ZBED4O75132 1171 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 IQCF3P0C7M6 154 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 RARSP54136 660 aaKnown RBP17.38■□□□□ 0.37
VPS29-209ENST00000551655 DEFB103AP81534 67 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 C12orf60Q5U649 245 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 PRPF38AQ8NAV1 312 aaKnown RBP17.38■□□□□ 0.37
VPS29-209ENST00000551655 PRSS33Q8NF86 280 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.38■□□□□ 0.37
VPS29-209ENST00000551655 CLUAP1Q96AJ1 413 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 KCNH6Q9H252 994 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 SLC38A10Q9HBR0 1119 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 LMCD1Q9NZU5 365 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 CTDP1Q9Y5B0 961 aaPredicted RBP17.38■□□□□ 0.37
VPS29-209ENST00000551655 LCTP09848 1927 aa17.38■□□□□ 0.37
VPS29-209ENST00000551655 USP17L12C9JPN9 530 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 USP17L21D6R901 530 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 F5H6K3 240 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 MBD4O95243 580 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 CHGBP05060 677 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 KLRC3Q07444 240 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 FAM47CQ5HY64 1035 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 TAPT1Q6NXT6 567 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 STK11IPQ8N1F8 1099 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 SEZ6LQ9BYH1 1024 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 A1CFQ9NQ94 594 aaKnown RBP17.37■□□□□ 0.37
VPS29-209ENST00000551655 MYH4Q9Y623 1939 aa17.37■□□□□ 0.37
VPS29-209ENST00000551655 ANP32CO43423 234 aa17.36■□□□□ 0.37
VPS29-209ENST00000551655 SUPT20HL2P0C7V6 817 aa17.36■□□□□ 0.37
VPS29-209ENST00000551655 TRIM27P14373 513 aa17.36■□□□□ 0.37
VPS29-209ENST00000551655 WDR5P61964 334 aaKnown RBP17.36■□□□□ 0.37
VPS29-209ENST00000551655 TCTN1Q2MV58 587 aa17.36■□□□□ 0.37
VPS29-209ENST00000551655 TRMT2AQ8IZ69 625 aaKnown RBP17.36■□□□□ 0.37
VPS29-209ENST00000551655 CHST13Q8NET6 341 aa17.36■□□□□ 0.37
VPS29-209ENST00000551655 PURBQ96QR8 312 aaKnown RBP17.36■□□□□ 0.37
VPS29-209ENST00000551655 FBXO40Q9UH90 709 aa17.36■□□□□ 0.37
VPS29-209ENST00000551655 TRIP12Q14669 1992 aaPredicted RBP17.35■□□□□ 0.37
VPS29-209ENST00000551655 GOLIM4O00461 696 aa17.35■□□□□ 0.37
VPS29-209ENST00000551655 MYL3P08590 195 aa17.35■□□□□ 0.37
VPS29-209ENST00000551655 RFC2P35250 354 aa17.35■□□□□ 0.37
VPS29-209ENST00000551655 KCNJ6P48051 423 aa17.35■□□□□ 0.37
VPS29-209ENST00000551655 ATP8B2P98198 1209 aa17.35■□□□□ 0.37
VPS29-209ENST00000551655 ZP2Q05996 745 aa17.35■□□□□ 0.37
VPS29-209ENST00000551655 TMED8Q6PL24 325 aaPredicted RBP17.35■□□□□ 0.37
VPS29-209ENST00000551655 AACSQ86V21 672 aa17.35■□□□□ 0.37
VPS29-209ENST00000551655 ARHGAP45Q92619 1136 aa17.35■□□□□ 0.37
VPS29-209ENST00000551655 ZBED2Q9BTP6 218 aa17.35■□□□□ 0.37
VPS29-209ENST00000551655 LINC01553A4QN01 128 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 ERVK-21P61565 698 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 PURAQ00577 322 aaKnown RBP17.34■□□□□ 0.37
VPS29-209ENST00000551655 NBPF20Q3BBV1 942 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 IER5LQ5T953 404 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 FAM117BQ6P1L5 589 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 KIAA1211Q6ZU35 1233 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 RETREG2Q8NC44 543 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 NEK9Q8TD19 979 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 CHMP4CQ96CF2 233 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 DNAJC2Q99543 621 aaKnown RBP17.34■□□□□ 0.37
VPS29-209ENST00000551655 ACAD9Q9H845 621 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 NOP58Q9Y2X3 529 aaKnown RBP17.34■□□□□ 0.37
VPS29-209ENST00000551655 SCN10AQ9Y5Y9 1956 aa17.34■□□□□ 0.37
VPS29-209ENST00000551655 ASB14A6NK59 587 aa17.33■□□□□ 0.36
VPS29-209ENST00000551655 ST18O60284 1047 aa17.33■□□□□ 0.36
VPS29-209ENST00000551655 BAIAP3O94812 1187 aa17.33■□□□□ 0.36
VPS29-209ENST00000551655 GPNMBQ14956 572 aa17.33■□□□□ 0.36
VPS29-209ENST00000551655 IQSEC1Q6DN90 963 aa17.33■□□□□ 0.36
VPS29-209ENST00000551655 TGS1Q96RS0 853 aaKnown RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms