RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ORC3Q9UBD5 711 aaPredicted RBP24.48■■□□□ 1.51
VPS29-206ENST00000549578 PNMA2Q9UL42 364 aa24.48■■□□□ 1.51
VPS29-206ENST00000549578 STK36Q9NRP7 1315 aa24.47■■□□□ 1.51
VPS29-206ENST00000549578 SCG2P13521 617 aa24.47■■□□□ 1.51
VPS29-206ENST00000549578 FDPSP14324 419 aaKnown RBP24.47■■□□□ 1.51
VPS29-206ENST00000549578 CUL4AQ13619 759 aa24.47■■□□□ 1.51
VPS29-206ENST00000549578 MROH8Q9H579 483 aa24.47■■□□□ 1.51
VPS29-206ENST00000549578 ABCB11O95342 1321 aa24.47■■□□□ 1.51
VPS29-206ENST00000549578 FKTNO75072 461 aa24.46■■□□□ 1.51
VPS29-206ENST00000549578 DEXIO95424 95 aa24.46■■□□□ 1.51
VPS29-206ENST00000549578 MAPK4P31152 587 aa24.46■■□□□ 1.51
VPS29-206ENST00000549578 COPB2P35606 906 aa24.46■■□□□ 1.51
VPS29-206ENST00000549578 CAP1Q01518 475 aa24.46■■□□□ 1.51
VPS29-206ENST00000549578 TKFCQ3LXA3 575 aa24.46■■□□□ 1.51
VPS29-206ENST00000549578 SMARCC2Q8TAQ2 1214 aa24.46■■□□□ 1.51
VPS29-206ENST00000549578 CD99L2Q8TCZ2 262 aa24.46■■□□□ 1.51
VPS29-206ENST00000549578 AIFM3Q96NN9 605 aa24.46■■□□□ 1.51
VPS29-206ENST00000549578 CWC22Q9HCG8 908 aaKnown RBP24.46■■□□□ 1.51
VPS29-206ENST00000549578 NFIBO00712 420 aa24.45■■□□□ 1.51
VPS29-206ENST00000549578 HSPA8P11142 646 aaKnown RBP24.45■■□□□ 1.51
VPS29-206ENST00000549578 TYW1BQ6NUM6 668 aa24.45■■□□□ 1.51
VPS29-206ENST00000549578 CHST13Q8NET6 341 aa24.45■■□□□ 1.51
VPS29-206ENST00000549578 CLEC4DQ8WXI8 215 aa24.45■■□□□ 1.51
VPS29-206ENST00000549578 ACAD9Q9H845 621 aa24.45■■□□□ 1.51
VPS29-206ENST00000549578 TSHZ2Q9NRE2 1034 aa24.45■■□□□ 1.51
VPS29-206ENST00000549578 STXBP3O00186 592 aa24.45■■□□□ 1.5
VPS29-206ENST00000549578 MGAMO43451 1857 aa24.45■■□□□ 1.5
VPS29-206ENST00000549578 PSMC4P43686 418 aa24.45■■□□□ 1.5
VPS29-206ENST00000549578 TRAF1Q13077 416 aa24.45■■□□□ 1.5
VPS29-206ENST00000549578 GPR142Q7Z601 462 aa24.45■■□□□ 1.5
VPS29-206ENST00000549578 TRIM47Q96LD4 638 aa24.45■■□□□ 1.5
VPS29-206ENST00000549578 BARHL2Q9NY43 387 aa24.45■■□□□ 1.5
VPS29-206ENST00000549578 MRPL11Q9Y3B7 192 aaKnown RBP24.45■■□□□ 1.5
VPS29-206ENST00000549578 FCGRTP55899 365 aa24.44■■□□□ 1.5
VPS29-206ENST00000549578 KIF22Q14807 665 aa24.44■■□□□ 1.5
VPS29-206ENST00000549578 FBXO40Q9UH90 709 aa24.44■■□□□ 1.5
VPS29-206ENST00000549578 TNPO2O14787 897 aaKnown RBP24.43■■□□□ 1.5
VPS29-206ENST00000549578 OPLAHO14841 1288 aa24.43■■□□□ 1.5
VPS29-206ENST00000549578 NAPAP54920 295 aa24.43■■□□□ 1.5
VPS29-206ENST00000549578 PLEKHH3Q7Z736 793 aa24.43■■□□□ 1.5
VPS29-206ENST00000549578 SHISA4Q96DD7 197 aa24.43■■□□□ 1.5
VPS29-206ENST00000549578 FOXD4L1Q9NU39 408 aa24.43■■□□□ 1.5
VPS29-206ENST00000549578 VPS54Q9P1Q0 977 aa24.43■■□□□ 1.5
VPS29-206ENST00000549578 PLXNB2O15031 1838 aa24.43■■□□□ 1.5
VPS29-206ENST00000549578 hCG_1984214I3L0E3 225 aa24.42■■□□□ 1.5
VPS29-206ENST00000549578 CTCFP49711 727 aaPredicted RBP24.42■■□□□ 1.5
VPS29-206ENST00000549578 HMGN5P82970 282 aaKnown RBP24.42■■□□□ 1.5
VPS29-206ENST00000549578 NSMFQ6X4W1 530 aa24.42■■□□□ 1.5
VPS29-206ENST00000549578 ZNF713Q8N859 430 aaPredicted RBP24.42■■□□□ 1.5
VPS29-206ENST00000549578 ERO1AQ96HE7 468 aa24.42■■□□□ 1.5
VPS29-206ENST00000549578 MMP19Q99542 508 aa24.42■■□□□ 1.5
VPS29-206ENST00000549578 ALG1Q9BT22 464 aa24.42■■□□□ 1.5
VPS29-206ENST00000549578 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.42■■□□□ 1.5
VPS29-206ENST00000549578 IVNS1ABPQ9Y6Y0 642 aa24.42■■□□□ 1.5
VPS29-206ENST00000549578 DOCK3Q8IZD9 2030 aa24.42■■□□□ 1.5
VPS29-206ENST00000549578 FCER1AP12319 257 aa24.41■■□□□ 1.5
VPS29-206ENST00000549578 LBX1P52954 281 aa24.41■■□□□ 1.5
VPS29-206ENST00000549578 ANKRD35Q8N283 1001 aa24.41■■□□□ 1.5
VPS29-206ENST00000549578 TBC1D5Q92609 795 aa24.41■■□□□ 1.5
VPS29-206ENST00000549578 A1CFQ9NQ94 594 aaKnown RBP24.41■■□□□ 1.5
VPS29-206ENST00000549578 GJB4Q9NTQ9 266 aa24.41■■□□□ 1.5
VPS29-206ENST00000549578 PTPREP23469 700 aa24.4■■□□□ 1.5
VPS29-206ENST00000549578 FOSBP53539 338 aa24.4■■□□□ 1.5
VPS29-206ENST00000549578 KCTD2Q14681 263 aa24.4■■□□□ 1.5
VPS29-206ENST00000549578 WASF1Q92558 559 aa24.4■■□□□ 1.5
VPS29-206ENST00000549578 SMC3Q9UQE7 1217 aa24.4■■□□□ 1.5
VPS29-206ENST00000549578 CASP8AP2Q9UKL3 1982 aa24.4■■□□□ 1.5
VPS29-206ENST00000549578 RBBP6Q7Z6E9 1792 aaKnown RBP24.4■■□□□ 1.5
VPS29-206ENST00000549578 GJB2P29033 226 aa24.4■■□□□ 1.5
VPS29-206ENST00000549578 PPP1R18Q6NYC8 613 aa24.4■■□□□ 1.5
VPS29-206ENST00000549578 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.4■■□□□ 1.5
VPS29-206ENST00000549578 FAM184AQ8NB25 1140 aa24.4■■□□□ 1.5
VPS29-206ENST00000549578 STRNO43815 780 aa24.39■■□□□ 1.49
VPS29-206ENST00000549578 CFBP00751 764 aa24.39■■□□□ 1.49
VPS29-206ENST00000549578 ADORA2AP29274 412 aa24.39■■□□□ 1.49
VPS29-206ENST00000549578 GRB14Q14449 540 aa24.39■■□□□ 1.49
VPS29-206ENST00000549578 BECN1Q14457 450 aa24.39■■□□□ 1.49
VPS29-206ENST00000549578 SLC30A10Q6XR72 485 aa24.39■■□□□ 1.49
VPS29-206ENST00000549578 RNF207Q6ZRF8 634 aa24.39■■□□□ 1.49
VPS29-206ENST00000549578 MCF2L2Q86YR7 1114 aa24.39■■□□□ 1.49
VPS29-206ENST00000549578 INTS4Q96HW7 963 aaKnown RBP24.39■■□□□ 1.49
VPS29-206ENST00000549578 CYP39A1Q9NYL5 469 aa24.39■■□□□ 1.49
VPS29-206ENST00000549578 SMCO2A6NFE2 343 aa24.38■■□□□ 1.49
VPS29-206ENST00000549578 PGK2P07205 417 aa24.38■■□□□ 1.49
VPS29-206ENST00000549578 RPS6P62753 249 aaKnown RBP24.38■■□□□ 1.49
VPS29-206ENST00000549578 BAATQ14032 418 aaPredicted RBP24.38■■□□□ 1.49
VPS29-206ENST00000549578 ABRAQ8N0Z2 381 aa24.38■■□□□ 1.49
VPS29-206ENST00000549578 CCDC12Q8WUD4 166 aaPredicted RBP24.38■■□□□ 1.49
VPS29-206ENST00000549578 PSTPIP2Q9H939 334 aa24.38■■□□□ 1.49
VPS29-206ENST00000549578 SH3GLB2Q9NR46 395 aa24.38■■□□□ 1.49
VPS29-206ENST00000549578 SLC15A5A6NIM6 579 aa24.37■■□□□ 1.49
VPS29-206ENST00000549578 HSP90AA1P07900 732 aaKnown RBP24.37■■□□□ 1.49
VPS29-206ENST00000549578 HOXA13P31271 388 aaPredicted RBP24.37■■□□□ 1.49
VPS29-206ENST00000549578 MORN1Q5T089 497 aa24.37■■□□□ 1.49
VPS29-206ENST00000549578 SPRYD3Q8NCJ5 442 aa24.37■■□□□ 1.49
VPS29-206ENST00000549578 RGS22Q8NE09 1264 aa24.37■■□□□ 1.49
VPS29-206ENST00000549578 CCDC148Q8NFR7 591 aa24.37■■□□□ 1.49
VPS29-206ENST00000549578 GJD2Q9UKL4 321 aa24.37■■□□□ 1.49
VPS29-206ENST00000549578 KCNJ14Q9UNX9 436 aa24.37■■□□□ 1.49
VPS29-206ENST00000549578 RBM19Q9Y4C8 960 aaKnown RBP24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms