RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 TRPV1Q8NER1 839 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 LPAR1Q92633 364 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 CDK15Q96Q40 435 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 LRFN3Q9BTN0 628 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 BACH2Q9BYV9 841 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 PRDM12Q9H4Q4 367 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 BICC1Q9H694 974 aaKnown RBP8.09□□□□□ -1.11
LIMA1-204ENST00000549064 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.09□□□□□ -1.11
LIMA1-204ENST00000549064 SCHIP1Q9P0W5 487 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-204ENST00000549064 RBPJLQ9UBG7 517 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 GAKO14976 1311 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 A6NJY4 79 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 CYP2C19P33261 490 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 ADD1P35611 737 aaKnown RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 MAPK8P45983 427 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 ERVK-24P63145 666 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 MRPS5P82675 430 aaKnown RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 PUM3Q15397 648 aaKnown RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 PPP1R26Q5T8A7 1209 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 SLC4A10Q6U841 1118 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 ALYREFQ86V81 257 aaKnown RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 CCAR1Q8IX12 1150 aaKnown RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 ANKRD44Q8N8A2 993 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 FERMT2Q96AC1 680 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 TIFAQ96CG3 184 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 EDC3Q96F86 508 aaKnown RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 GAS2L1Q99501 681 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 C2orf49Q9BVC5 232 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 C1QTNF1Q9BXJ1 281 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 OSBPL5Q9H0X9 879 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 BCL11AQ9H165 835 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 EPHX3Q9H6B9 360 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 ARHGEF10LQ9HCE6 1279 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.08□□□□□ -1.12
LIMA1-204ENST00000549064 STIM2Q9P246 746 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 HCN4Q9Y3Q4 1203 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 USP3Q9Y6I4 520 aa8.08□□□□□ -1.12
LIMA1-204ENST00000549064 KIF16BQ96L93 1317 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-204ENST00000549064 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-204ENST00000549064 GRXCR1A8MXD5 290 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 VAMP4O75379 141 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 SLC5A1P13866 664 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 HOXA7P31268 230 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-204ENST00000549064 CAP2P40123 477 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 ADCYAP1R1P41586 468 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 BTDP43251 543 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 SMTNP53814 917 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 JAG1P78504 1218 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 MRPL58Q14197 206 aaKnown RBP8.07□□□□□ -1.12
LIMA1-204ENST00000549064 ADGRE1Q14246 886 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 SNX17Q15036 470 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 SHROOM1Q2M3G4 852 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-204ENST00000549064 WDR78Q5VTH9 848 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 MFSD14CQ5VZR4 134 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 CCDC116Q8IYX3 515 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 NPLOC4Q8TAT6 608 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 CWC22Q9HCG8 908 aaKnown RBP8.07□□□□□ -1.12
LIMA1-204ENST00000549064 RNF19AQ9NV58 838 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 LRFN2Q9ULH4 789 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 SMCHD1A6NHR9 2005 aa8.07□□□□□ -1.12
LIMA1-204ENST00000549064 UTYO14607 1347 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 MUC6Q6W4X9 2439 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 KBTBD13C9JR72 458 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 MSCO60682 206 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 CNMDO75829 334 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 ALDH1L1O75891 902 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 CYBAP13498 195 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 PHKA1P46020 1223 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 BACE1P56817 501 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 RHBDL3P58872 404 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 TFF2Q03403 129 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 KCNC4Q03721 635 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 TLE2Q04725 743 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 RABL6Q3YEC7 729 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-204ENST00000549064 FAM26DQ5JW98 314 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 AKNAD1Q5T1N1 836 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 ATCAYQ86WG3 371 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 LPIN2Q92539 896 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 PRKD2Q9BZL6 878 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 SRCIN1Q9C0H9 1055 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 AS3MTQ9HBK9 375 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 TMOD4Q9NZQ9 345 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 CDK5RAP2Q96SN8 1893 aa8.06□□□□□ -1.12
LIMA1-204ENST00000549064 SALL1Q9NSC2 1324 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 FANCIQ9NVI1 1328 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 ZBTB39O15060 712 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 GPR182O15218 404 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 ADH1CP00326 375 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 IL2RAP01589 272 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 BMP1P13497 986 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 RAG1P15918 1043 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 KCNQ1P51787 676 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 PSMA6P60900 246 aaKnown RBP8.05□□□□□ -1.12
LIMA1-204ENST00000549064 ATP2B2Q01814 1243 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 PLCB3Q01970 1234 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 EHHADHQ08426 723 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 DSC3Q14574 896 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 SH3PXD2AQ5TCZ1 1133 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 ALKBH2Q6NS38 261 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms