RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 CYP39A1Q9NYL5 469 aa13.78□□□□□ -0.2
HDAC4-216ENST00000544989 DLL1O00548 723 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 ABCB11O95342 1321 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 SNAI1O95863 264 aaPredicted RBP13.77□□□□□ -0.21
HDAC4-216ENST00000544989 GOLGA8HP0CJ92 632 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 MCM5P33992 734 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 SNAP25P60880 206 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 ACVR2BQ13705 512 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 PRAMEF19Q5SWL8 479 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 NSMFQ6X4W1 530 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 CYB5R4Q7L1T6 521 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 CATIPQ7Z7H3 387 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 SPC25Q9HBM1 224 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 XPNPEP3Q9NQH7 507 aa13.77□□□□□ -0.21
HDAC4-216ENST00000544989 ZHX1Q9UKY1 873 aaPredicted RBP13.77□□□□□ -0.21
HDAC4-216ENST00000544989 PTPDC1A2A3K4 754 aa13.76□□□□□ -0.21
HDAC4-216ENST00000544989 DHX16O60231 1041 aaKnown RBP13.76□□□□□ -0.21
HDAC4-216ENST00000544989 DUSP11O75319 330 aaKnown RBP13.76□□□□□ -0.21
HDAC4-216ENST00000544989 CDC37Q16543 378 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-216ENST00000544989 MUM1L1Q5H9M0 696 aa13.76□□□□□ -0.21
HDAC4-216ENST00000544989 TMEM67Q5HYA8 995 aa13.76□□□□□ -0.21
HDAC4-216ENST00000544989 MCF2L2Q86YR7 1114 aa13.76□□□□□ -0.21
HDAC4-216ENST00000544989 CCDC144CPQ8IYA2 1237 aa13.76□□□□□ -0.21
HDAC4-216ENST00000544989 MB21D2Q8IYB1 491 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-216ENST00000544989 ADGRF4Q8IZF3 695 aa13.76□□□□□ -0.21
HDAC4-216ENST00000544989 TMEM87BQ96K49 555 aa13.76□□□□□ -0.21
HDAC4-216ENST00000544989 MAP3K14Q99558 947 aa13.76□□□□□ -0.21
HDAC4-216ENST00000544989 TSEN34Q9BSV6 310 aaKnown RBP13.76□□□□□ -0.21
HDAC4-216ENST00000544989 MRPL11Q9Y3B7 192 aaKnown RBP13.76□□□□□ -0.21
HDAC4-216ENST00000544989 SPTBN5Q9NRC6 3674 aaKnown RBP13.76□□□□□ -0.21
HDAC4-216ENST00000544989 KLRF2D3W0D1 207 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 SLC27A2O14975 620 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 KIF5BP33176 963 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 CNTN2Q02246 1040 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 KRT32Q14532 448 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 NECTIN1Q15223 517 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 LRRC41Q15345 812 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 CREB3L3Q68CJ9 461 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 RNF207Q6ZRF8 634 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 FBXO11Q86XK2 927 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 SAMD3Q8N6K7 520 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 DNERQ8NFT8 737 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 FGD4Q96M96 766 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 SENP6Q9GZR1 1112 aaPredicted RBP13.75□□□□□ -0.21
HDAC4-216ENST00000544989 UBA5Q9GZZ9 404 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 PPP4R2Q9NY27 417 aa13.75□□□□□ -0.21
HDAC4-216ENST00000544989 LAMA2P24043 3122 aaKnown RBP13.75□□□□□ -0.21
HDAC4-216ENST00000544989 FRMPD3Q5JV73 1810 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 PALM3A6NDB9 673 aaPredicted RBP13.74□□□□□ -0.21
HDAC4-216ENST00000544989 NFIBO00712 420 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 DDAH1O94760 285 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 CALM1P0DP23 149 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 CALM2P0DP24 149 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 CALM3P0DP25 149 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 TAL1P17542 331 aaPredicted RBP13.74□□□□□ -0.21
HDAC4-216ENST00000544989 LIFRP42702 1097 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 BAATQ14032 418 aaPredicted RBP13.74□□□□□ -0.21
HDAC4-216ENST00000544989 GRM4Q14833 912 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 GJC2Q5T442 439 aaPredicted RBP13.74□□□□□ -0.21
HDAC4-216ENST00000544989 STOX1Q6ZVD7 989 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 PCSK9Q8NBP7 692 aaKnown RBP13.74□□□□□ -0.21
HDAC4-216ENST00000544989 IGDCC4Q8TDY8 1250 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 MORC4Q8TE76 937 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 CLEC4DQ8WXI8 215 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 LZTS2Q9BRK4 669 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 AMNQ9BXJ7 453 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 VTA1Q9NP79 307 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 MAP3K20Q9NYL2 800 aaKnown RBP13.74□□□□□ -0.21
HDAC4-216ENST00000544989 RBM27Q9P2N5 1060 aaKnown RBP13.74□□□□□ -0.21
HDAC4-216ENST00000544989 MAD2L2Q9UI95 211 aa13.74□□□□□ -0.21
HDAC4-216ENST00000544989 A0A1W2PPC1 479 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 SOWAHBA6NEL2 793 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 MOXD2PA6NHM9 499 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 ZBTB5O15062 677 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 PRC1O43663 620 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 REC8O95072 547 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 HMGB1P09429 215 aaKnown RBP13.73□□□□□ -0.21
HDAC4-216ENST00000544989 CST5P28325 142 aaPredicted RBP13.73□□□□□ -0.21
HDAC4-216ENST00000544989 GNAQP50148 359 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 TROAPQ12815 778 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 QRICH1Q2TAL8 776 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 CCDC144BQ3MJ40 725 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 TSGA10IPQ3SY00 556 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 USH1GQ495M9 461 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 C1orf53Q5VUE5 145 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 ANO1Q5XXA6 986 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 IQSEC1Q6DN90 963 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 C7orf61Q8IZ16 206 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 CTCFLQ8NI51 663 aaPredicted RBP13.73□□□□□ -0.21
HDAC4-216ENST00000544989 NUP133Q8WUM0 1156 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 JMJD4Q9H9V9 463 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 PHF24Q9UPV7 400 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 Q9Y3F1 56 aa13.73□□□□□ -0.21
HDAC4-216ENST00000544989 CCDC69A6NI79 296 aa13.72□□□□□ -0.21
HDAC4-216ENST00000544989 EPB41L2O43491 1005 aaKnown RBP13.72□□□□□ -0.21
HDAC4-216ENST00000544989 ZEB2O60315 1214 aa13.72□□□□□ -0.21
HDAC4-216ENST00000544989 MYCNP04198 464 aaPredicted RBP13.72□□□□□ -0.21
HDAC4-216ENST00000544989 CALML3P27482 149 aa13.72□□□□□ -0.21
HDAC4-216ENST00000544989 SMARCA1P28370 1054 aa13.72□□□□□ -0.21
HDAC4-216ENST00000544989 ALDH5A1P51649 535 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms