RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 MAN1A2O60476 641 aa11.34□□□□□ -0.59
PCDH9-204ENST00000544246 RPSAP08865 295 aaKnown RBP11.34□□□□□ -0.59
PCDH9-204ENST00000544246 TUBB6Q9BUF5 446 aa11.34□□□□□ -0.59
PCDH9-204ENST00000544246 SLC27A2O14975 620 aa11.34□□□□□ -0.59
PCDH9-204ENST00000544246 LONP1P36776 959 aaKnown RBP11.34□□□□□ -0.59
PCDH9-204ENST00000544246 SLC1A4P43007 532 aa11.34□□□□□ -0.59
PCDH9-204ENST00000544246 ATG16L1Q676U5 607 aa11.34□□□□□ -0.59
PCDH9-204ENST00000544246 RNF169Q8NCN4 708 aa11.34□□□□□ -0.59
PCDH9-204ENST00000544246 GIPC2Q8TF65 315 aa11.34□□□□□ -0.59
PCDH9-204ENST00000544246 SLC5A4Q9NY91 659 aa11.34□□□□□ -0.59
PCDH9-204ENST00000544246 KCNJ18B7U540 433 aa11.33□□□□□ -0.59
PCDH9-204ENST00000544246 KCNJ12Q14500 433 aa11.33□□□□□ -0.59
PCDH9-204ENST00000544246 FAM98CQ17RN3 349 aaKnown RBP11.33□□□□□ -0.59
PCDH9-204ENST00000544246 TTBK2Q6IQ55 1244 aa11.33□□□□□ -0.59
PCDH9-204ENST00000544246 GLG1Q92896 1179 aa11.33□□□□□ -0.59
PCDH9-204ENST00000544246 TTC1Q99614 292 aa11.33□□□□□ -0.59
PCDH9-204ENST00000544246 MED4Q9NPJ6 270 aa11.33□□□□□ -0.59
PCDH9-204ENST00000544246 ZNF148Q9UQR1 794 aa11.33□□□□□ -0.59
PCDH9-204ENST00000544246 GTPBP10A4D1E9 387 aaKnown RBP11.33□□□□□ -0.6
PCDH9-204ENST00000544246 POC1B-GALNT4F8VUJ3 575 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 KRT10P13645 584 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 HIBADHP31937 336 aaKnown RBP11.33□□□□□ -0.6
PCDH9-204ENST00000544246 TRIM60Q495X7 471 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 NSMFQ6X4W1 530 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 LINS1Q8NG48 757 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.33□□□□□ -0.6
PCDH9-204ENST00000544246 UHMK1Q8TAS1 419 aaKnown RBP11.33□□□□□ -0.6
PCDH9-204ENST00000544246 PIP4K2CQ8TBX8 421 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 UBN1Q9NPG3 1134 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 ANGEL1Q9UNK9 670 aaKnown RBP11.33□□□□□ -0.6
PCDH9-204ENST00000544246 UGGT1Q9NYU2 1555 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 RALGAPBQ86X10 1494 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 MAP7D3Q8IWC1 876 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 PRPF38AQ8NAV1 312 aaKnown RBP11.33□□□□□ -0.6
PCDH9-204ENST00000544246 H0YCG3 227 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 CFBP00751 764 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 PTPRKQ15262 1439 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 PPP2R5BQ15173 497 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 PDXDC1Q6P996 788 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 TRMT10CQ7L0Y3 403 aaKnown RBP11.33□□□□□ -0.6
PCDH9-204ENST00000544246 GPBP1Q86WP2 473 aa11.33□□□□□ -0.6
PCDH9-204ENST00000544246 RYBPQ8N488 228 aaPredicted RBP11.33□□□□□ -0.6
PCDH9-204ENST00000544246 SYNJ2BP-COX16A0A087WUM0 186 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 FLOT2Q14254 428 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 ADPGKQ9BRR6 497 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 CENPKQ9BS16 269 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 USP26Q9BXU7 913 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 COX16Q9P0S2 106 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 CAPN11Q9UMQ6 739 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 KDM2BQ8NHM5 1336 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 SGK1O00141 431 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 LTKP29376 864 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 ADKP55263 362 aaKnown RBP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 MYSM1Q5VVJ2 828 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 CEP85Q6P2H3 762 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 SRRM1Q8IYB3 904 aaKnown RBP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 CPXCR1Q8N123 301 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 C17orf53Q8N3J3 647 aaPredicted RBP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 UIMC1Q96RL1 719 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 RPS6KC1Q96S38 1066 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 BICC1Q9H694 974 aaKnown RBP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 INTS9Q9NV88 658 aaKnown RBP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 GAS7O60861 476 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 GNL1P36915 607 aaPredicted RBP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 ART3Q13508 389 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 TRMT44Q8IYL2 757 aaKnown RBP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 MYOCDQ8IZQ8 938 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 ORAI2Q96SN7 254 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 TXLNGQ9NUQ3 528 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 PTPREP23469 700 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 MORC3Q14149 939 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 SESTD1Q86VW0 696 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 MLXIPQ9HAP2 919 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 K7ENM7 598 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 APBA3O96018 575 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 CPP00450 1065 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 POLE2P56282 527 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 THOC5Q13769 683 aaKnown RBP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 GNPTABQ3T906 1256 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 FAM47CQ5HY64 1035 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 GRAMD4Q6IC98 578 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 ARMC9Q7Z3E5 817 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 ZC3H15Q8WU90 426 aaKnown RBP11.32□□□□□ -0.6
PCDH9-204ENST00000544246 SERPINI1Q99574 410 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 HECW2Q9P2P5 1572 aa11.32□□□□□ -0.6
PCDH9-204ENST00000544246 TCP1P17987 556 aaKnown RBP11.31□□□□□ -0.6
PCDH9-204ENST00000544246 PIK3CAP42336 1068 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 PNOCQ13519 176 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 FIS1Q9Y3D6 152 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 TCIRG1Q13488 830 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 ARHGEF16Q5VV41 709 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 ADAT2Q7Z6V5 191 aaKnown RBP11.31□□□□□ -0.6
PCDH9-204ENST00000544246 TRIML1Q8N9V2 468 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 SFMBT1Q9UHJ3 866 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 GGA1Q9UJY5 639 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 KAT6BQ8WYB5 2073 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 ATXN8OSP0DMR3 200 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 OCA2Q04671 838 aa11.31□□□□□ -0.6
PCDH9-204ENST00000544246 TAF11Q15544 211 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms