RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 HAUS4Q9H6D7 363 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 ADARB2Q9NS39 739 aaKnown RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 RNF40O75150 1001 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 GTF2A2P52657 109 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 DENND2CQ68D51 928 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 JPH2Q9BR39 696 aaPredicted RBP8.59□□□□□ -1.03
VPS13D-211ENST00000543710 LMBRD1Q9NUN5 540 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 USP40Q9NVE5 1235 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 GUCA1BQ9UMX6 200 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 KAT6BQ8WYB5 2073 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 LRRC7Q96NW7 1537 aa8.59□□□□□ -1.03
VPS13D-211ENST00000543710 CRKLP46109 303 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 GPR101Q96P66 508 aaPredicted RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 CLTCL1P53675 1640 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 TTI1O43156 1089 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 SLC39A6Q13433 755 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 CUL4BQ13620 913 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 TDRD7Q8NHU6 1098 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 NELFBQ8WX92 580 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 THUMPD2Q9BTF0 503 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 HCN4Q9Y3Q4 1203 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 DIP2AQ14689 1571 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 EEF1GP26641 437 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 IL6STP40189 918 aaPredicted RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 NEDD9Q14511 834 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 GLE1Q53GS7 698 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 PHLDB3Q6NSJ2 640 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 RNF180Q86T96 592 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 RDH13Q8NBN7 331 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 PBKQ96KB5 322 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 AMFRQ9UKV5 643 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 ZNRF3Q9ULT6 936 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 TYW5A2RUC4 315 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 SFSWAPQ12872 951 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 PTGDRQ13258 359 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 INF2Q27J81 1249 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 RNF10Q8N5U6 811 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 BRIP1Q9BX63 1249 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 FOXP1Q9H334 677 aaPredicted RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 FAM8A1Q9UBU6 413 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 AGTPBP1Q9UPW5 1226 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 GINS2Q9Y248 185 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 EEF2P13639 858 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 MCM7P33993 719 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 BPIFB4P59827 614 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 RPS6KA1Q15418 735 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 PKN2Q16513 984 aaKnown RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 ZNF365Q70YC5 407 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 KIAA0825Q8IV33 1275 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 RNF169Q8NCN4 708 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 DHTKD1Q96HY7 919 aaPredicted RBP8.58□□□□□ -1.04
VPS13D-211ENST00000543710 FNBP1Q96RU3 617 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 RPS6KC1Q96S38 1066 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 THAP9Q9H5L6 903 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 VCX3AQ9NNX9 186 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 DNM3Q9UQ16 869 aa8.58□□□□□ -1.04
VPS13D-211ENST00000543710 ABCC3O15438 1527 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 XPOTO43592 962 aaKnown RBP8.57□□□□□ -1.04
VPS13D-211ENST00000543710 TPD52P55327 224 aaPredicted RBP8.57□□□□□ -1.04
VPS13D-211ENST00000543710 TBC1D10BQ4KMP7 808 aaPredicted RBP8.57□□□□□ -1.04
VPS13D-211ENST00000543710 ALS2CLQ60I27 953 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 NECAB1Q8N987 351 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 CCDC63Q8NA47 563 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 NSMCE1Q8WV22 266 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 PCDHB13Q9Y5F0 798 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 MFSD14BQ5SR56 506 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 CABP7Q86V35 215 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 CHAMP1Q96JM3 812 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 FBXL21Q9UKT6 434 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 MAP3K7O43318 606 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 KPNA2P52292 529 aaKnown RBP8.57□□□□□ -1.04
VPS13D-211ENST00000543710 DOK7Q18PE1 504 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 GLG1Q92896 1179 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 GDAP1L1Q96MZ0 367 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 HAUS7Q99871 368 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 MCM9Q9NXL9 1143 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS13D-211ENST00000543710 ZNF202O95125 648 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 CALCRLQ16602 461 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 HSP90AA5PQ58FG0 334 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 PPP1R18Q6NYC8 613 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 RAB11FIP4Q86YS3 637 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 RABGGTAQ92696 567 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 RIC8AQ9NPQ8 531 aa8.57□□□□□ -1.04
VPS13D-211ENST00000543710 IPO11Q9UI26 975 aaKnown RBP8.57□□□□□ -1.04
VPS13D-211ENST00000543710 CLGNO14967 610 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 FOSP01100 380 aaPredicted RBP8.56□□□□□ -1.04
VPS13D-211ENST00000543710 EIF3BP55884 814 aaKnown RBP8.56□□□□□ -1.04
VPS13D-211ENST00000543710 TBC1D8BQ0IIM8 1120 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 AOC3Q16853 763 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 EFCAB13Q8IY85 973 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 CSGALNACT2Q8N6G5 542 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 SSH3Q8TE77 659 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 MID2Q9UJV3 735 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 CARNS1A5YM72 827 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 F8W8V4 182 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 GCFC2P16383 781 aaKnown RBP8.56□□□□□ -1.04
VPS13D-211ENST00000543710 HHATQ5VTY9 493 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 CCDC170Q8IYT3 715 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 CEP120Q8N960 986 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms