RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	PAWR	Q96IZ0	340 aa	Known RBP	12.86	□□□□□ -0.35
DDB1-222	ENST00000543627	JMJD4	Q9H9V9	463 aa		12.86	□□□□□ -0.35
DDB1-222	ENST00000543627	DDX20	Q9UHI6	824 aa	Known RBP	12.86	□□□□□ -0.35
DDB1-222	ENST00000543627	DIS3	Q9Y2L1	958 aa	Known RBP	12.86	□□□□□ -0.35
DDB1-222	ENST00000543627	SLC12A7	Q9Y666	1083 aa		12.86	□□□□□ -0.35
DDB1-222	ENST00000543627	DDX49	Q9Y6V7	483 aa	Known RBP	12.86	□□□□□ -0.35
DDB1-222	ENST00000543627	RNF207	Q6ZRF8	634 aa		12.85	□□□□□ -0.35
DDB1-222	ENST00000543627	DHX32	Q7L7V1	743 aa	Known RBP	12.85	□□□□□ -0.35
DDB1-222	ENST00000543627	CMTR1	Q8N1G2	835 aa	Known RBP	12.85	□□□□□ -0.35
DDB1-222	ENST00000543627	DIS3L	Q8TF46	1054 aa	Known RBP	12.85	□□□□□ -0.35
DDB1-222	ENST00000543627	PIGS	Q96S52	555 aa		12.85	□□□□□ -0.35
DDB1-222	ENST00000543627	SNX14	Q9Y5W7	946 aa		12.85	□□□□□ -0.35
DDB1-222	ENST00000543627	PFAS	O15067	1338 aa		12.85	□□□□□ -0.35
DDB1-222	ENST00000543627	DNAJC25-GNG10	A0A024R161	153 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	PALM3	A6NDB9	673 aa	Predicted RBP	12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	SOWAHB	A6NEL2	793 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	CYBA	P13498	195 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	KIF5B	P33176	963 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	HSPA4	P34932	840 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	TROAP	Q12815	778 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	GJC2	Q5T442	439 aa	Predicted RBP	12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	BLOC1S2	Q6QNY1	142 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	ARMCX2	Q7L311	632 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	NECAB2	Q7Z6G3	386 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	MICU3	Q86XE3	530 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	CYP39A1	Q9NYL5	469 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	PNMA2	Q9UL42	364 aa		12.84	□□□□□ -0.35
DDB1-222	ENST00000543627	SEPT4	O43236	478 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	SNAI1	O95863	264 aa	Predicted RBP	12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	CFB	P00751	764 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	CAST	P20810	708 aa	Known RBP	12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	ACVR2B	Q13705	512 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	LHX8	Q68G74	356 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	SLC30A10	Q6XR72	485 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627		Q6ZUG5	572 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	CLEC4D	Q8WXI8	215 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	TBC1D5	Q92609	795 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	LENG1	Q96BZ8	264 aa	Predicted RBP	12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	AMN	Q9BXJ7	453 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	CRISPLD2	Q9H0B8	497 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	OGDHL	Q9ULD0	1010 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	MRPL11	Q9Y3B7	192 aa	Known RBP	12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	PCDHA1	Q9Y5I3	950 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	ABCB11	O95342	1321 aa		12.83	□□□□□ -0.36
DDB1-222	ENST00000543627	KLF18	A0A0U1RQI7	1052 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	hCG_1642624	A0A1W2PR95	340 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	ASB14	A6NK59	587 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	ZBTB5	O15062	677 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	MSC	O60682	206 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	DDAH1	O94760	285 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	PLEKHA8P1	O95397	391 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	PGK1	P00558	417 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	HMGB1	P09429	215 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	CALM1	P0DP23	149 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	CALM2	P0DP24	149 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	CALM3	P0DP25	149 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	RARB	P10826	455 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	PSMA5	P28066	241 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	LIFR	P42702	1097 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	RPS6	P62753	249 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	MCF2L2	Q86YR7	1114 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	FAM133A	Q8N9E0	248 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	HTATIP2	Q9BUP3	242 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	USP26	Q9BXU7	913 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	SENP6	Q9GZR1	1112 aa	Predicted RBP	12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	C11orf49	Q9H6J7	331 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	ADD3	Q9UEY8	706 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	FAM184B	Q9ULE4	1060 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	SMCHD1	A6NHR9	2005 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	PLXNA1	Q9UIW2	1896 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	WDR19	Q8NEZ3	1342 aa		12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	MKI67	P46013	3256 aa	Known RBP	12.82	□□□□□ -0.36
DDB1-222	ENST00000543627	ZBTB43	O43298	467 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	CYTH3	O43739	400 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	ZNF865	P0CJ78	1059 aa	Predicted RBP	12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	AKR1A1	P14550	325 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	GNAQ	P50148	359 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	EXOSC10	Q01780	885 aa	Known RBP	12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	APOBR	Q0VD83	1088 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	TSGA10IP	Q3SY00	556 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	ZNF467	Q7Z7K2	595 aa	Predicted RBP	12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	MSL3	Q8N5Y2	521 aa	Known RBP	12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	FANCB	Q8NB91	859 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	ARRDC4	Q8NCT1	418 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	BRF1	Q92994	677 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	FERMT2	Q96AC1	680 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	RRP36	Q96EU6	259 aa	Known RBP	12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	FGD4	Q96M96	766 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	MTA3	Q9BTC8	594 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	ABHD16B	Q9H3Z7	469 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	XPNPEP3	Q9NQH7	507 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	SEC63	Q9UGP8	760 aa	Known RBP	12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	BRPF3	Q9ULD4	1205 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	SYNGAP1	Q96PV0	1343 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	ZNF236	Q9UL36	1845 aa		12.81	□□□□□ -0.36
DDB1-222	ENST00000543627	PNMA6F	A0A0J9YX94	578 aa		12.8	□□□□□ -0.36
DDB1-222	ENST00000543627	GOLGA8A	A7E2F4	631 aa		12.8	□□□□□ -0.36
DDB1-222	ENST00000543627	GOLGA8B	A8MQT2	603 aa		12.8	□□□□□ -0.36
DDB1-222	ENST00000543627	KBTBD13	C9JR72	458 aa		12.8	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms