RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 DYNC1LI2O43237 492 aaPredicted RBP11.48□□□□□ -0.57
YBX3-211ENST00000541351 ADCY6O43306 1168 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 GALR2O43603 387 aaPredicted RBP11.48□□□□□ -0.57
YBX3-211ENST00000541351 GUCY1A2P33402 732 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 CPT1AP50416 773 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 IRX5P78411 483 aaPredicted RBP11.48□□□□□ -0.57
YBX3-211ENST00000541351 PTPN11Q06124 597 aaPredicted RBP11.48□□□□□ -0.57
YBX3-211ENST00000541351 COL19A1Q14993 1142 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 CCDC158Q5M9N0 1113 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 IQSEC1Q6DN90 963 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 CNKSR3Q6P9H4 555 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 PI16Q6UXB8 463 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.48□□□□□ -0.57
YBX3-211ENST00000541351 CCDC144CPQ8IYA2 1237 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 ADSSL1Q8N142 457 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 CAGE1Q8TC20 777 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 AFAP1L1Q8TED9 768 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 PPP2R3CQ969Q6 453 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 TRMT13Q9NUP7 481 aaKnown RBP11.48□□□□□ -0.57
YBX3-211ENST00000541351 GRIN2DO15399 1336 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 RAD50Q92878 1312 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 FOCADQ5VW36 1801 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 CDK5RAP2Q96SN8 1893 aa11.47□□□□□ -0.57
YBX3-211ENST00000541351 MBTPS2O43462 519 aa11.47□□□□□ -0.57
YBX3-211ENST00000541351 PSMC6P62333 389 aa11.47□□□□□ -0.57
YBX3-211ENST00000541351 IKBKEQ14164 716 aa11.47□□□□□ -0.57
YBX3-211ENST00000541351 PUM1Q14671 1186 aaKnown RBP eCLIP11.47□□□□□ -0.57
YBX3-211ENST00000541351 TCEAL5Q5H9L2 206 aa11.47□□□□□ -0.57
YBX3-211ENST00000541351 FAM47CQ5HY64 1035 aa11.47□□□□□ -0.57
YBX3-211ENST00000541351 NFRKBQ6P4R8 1299 aa11.47□□□□□ -0.57
YBX3-211ENST00000541351 CHST13Q8NET6 341 aa11.47□□□□□ -0.57
YBX3-211ENST00000541351 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.47□□□□□ -0.57
YBX3-211ENST00000541351 GNEQ9Y223 722 aaKnown RBP11.47□□□□□ -0.57
YBX3-211ENST00000541351 COL11A1P12107 1806 aaPredicted RBP11.46□□□□□ -0.57
YBX3-211ENST00000541351 USP17L12C9JPN9 530 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 USP17L21D6R901 530 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 ATP2A1O14983 1001 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 KPNA6O60684 536 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 ZBED4O75132 1171 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 CYP7A1P22680 504 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 TFCP2Q12800 502 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 TTC39AQ5SRH9 613 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 RPAINQ86UA6 219 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 CCDC17Q96LX7 622 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 SLF1Q9BQI6 1058 aa11.46□□□□□ -0.57
YBX3-211ENST00000541351 MTG1Q9BT17 334 aaPredicted RBP11.46□□□□□ -0.57
YBX3-211ENST00000541351 PA2G4Q9UQ80 394 aaKnown RBP11.46□□□□□ -0.57
YBX3-211ENST00000541351 MYH1P12882 1939 aa11.45□□□□□ -0.58
YBX3-211ENST00000541351 SIP14410 1827 aa11.45□□□□□ -0.58
YBX3-211ENST00000541351 MED19A0JLT2 244 aaPredicted RBP11.45□□□□□ -0.58
YBX3-211ENST00000541351 H3BNC9 293 aa11.45□□□□□ -0.58
YBX3-211ENST00000541351 RAD21O60216 631 aa11.45□□□□□ -0.58
YBX3-211ENST00000541351 GPM6BQ13491 265 aa11.45□□□□□ -0.58
YBX3-211ENST00000541351 SPRED2Q7Z698 418 aa11.45□□□□□ -0.58
YBX3-211ENST00000541351 AMOTL1Q8IY63 956 aa11.45□□□□□ -0.58
YBX3-211ENST00000541351 CD207Q9UJ71 328 aa11.45□□□□□ -0.58
YBX3-211ENST00000541351 TPRP12270 2363 aaKnown RBP11.45□□□□□ -0.58
YBX3-211ENST00000541351 AMHP03971 560 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 VCPP55072 806 aaKnown RBP11.44□□□□□ -0.58
YBX3-211ENST00000541351 DYNLL1P63167 89 aaKnown RBP11.44□□□□□ -0.58
YBX3-211ENST00000541351 GABPAQ06546 454 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 EPC2Q52LR7 807 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 ADGRA1Q86SQ6 560 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 PRPF38AQ8NAV1 312 aaKnown RBP11.44□□□□□ -0.58
YBX3-211ENST00000541351 REPS2Q8NFH8 660 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 CNTNAP3BQ96NU0 1288 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 CNTNAP3Q9BZ76 1288 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 LMAN2LQ9H0V9 348 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 KANSL2Q9H9L4 492 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 FBXO28Q9NVF7 368 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 PKD1L2Q7Z442 2459 aa11.44□□□□□ -0.58
YBX3-211ENST00000541351 CHD8Q9HCK8 2581 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 ASTN1O14525 1302 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.43□□□□□ -0.58
YBX3-211ENST00000541351 FDX1P10109 184 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 SELPP16109 830 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 SLC4A3P48751 1232 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 PLCD1P51178 756 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 OAZ1P54368 228 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 DEFB103AP81534 67 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 CTC1Q2NKJ3 1217 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 KIAA1755Q5JYT7 1200 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 MIGA1Q8NAN2 632 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 C17orf80Q9BSJ5 609 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 CRNKL1Q9BZJ0 848 aaKnown RBP11.43□□□□□ -0.58
YBX3-211ENST00000541351 KATNBL1Q9H079 304 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 SEMA4AQ9H3S1 761 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 VTA1Q9NP79 307 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 MCM9Q9NXL9 1143 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 COG6Q9Y2V7 657 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 RWDD3Q9Y3V2 267 aa11.43□□□□□ -0.58
YBX3-211ENST00000541351 KMT2EQ8IZD2 1858 aa11.42□□□□□ -0.58
YBX3-211ENST00000541351 IDH1O75874 414 aaKnown RBP11.42□□□□□ -0.58
YBX3-211ENST00000541351 MYL3P08590 195 aa11.42□□□□□ -0.58
YBX3-211ENST00000541351 SMPD1P17405 629 aa11.42□□□□□ -0.58
YBX3-211ENST00000541351 PURAQ00577 322 aaKnown RBP11.42□□□□□ -0.58
YBX3-211ENST00000541351 CLUL1Q15846 466 aa11.42□□□□□ -0.58
YBX3-211ENST00000541351 ZBTB33Q86T24 672 aa11.42□□□□□ -0.58
YBX3-211ENST00000541351 CPXCR1Q8N123 301 aa11.42□□□□□ -0.58
YBX3-211ENST00000541351 ALG13Q9NP73 1137 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms