RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SV2BQ7L1I2 683 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 RSPH3Q86UC2 560 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 ZMYND12Q9H0C1 365 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 VIPAS39Q9H9C1 493 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 NLRC4Q9NPP4 1024 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 KRT82Q9NSB4 513 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 GOLGA8QA0A0J9YX86 632 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 GOLGA8OA6NCC3 632 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 BTBD11A6QL63 1104 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 GOLGA8NF8WBI6 632 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 SH3BP5O60239 455 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 CXCR5P32302 372 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 HSPA9P38646 679 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 PPP2R5CQ13362 524 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 ZNF174Q15697 407 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 FAM47EQ6ZV65 393 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 VSTM4Q8IW00 320 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 FAM161BQ96MY7 647 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 MTRQ99707 1265 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 MRGBPQ9NV56 204 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 MDH1P40925 334 aaKnown RBP9.53□□□□□ -0.88
YBX3-208ENST00000540447 KAZNQ674X7 775 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 CATSPER2Q96P56 530 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 CNNM2Q9H8M5 875 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 MBIPQ9NS73 344 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 BSDC1Q9NW68 430 aaPredicted RBP9.53□□□□□ -0.88
YBX3-208ENST00000540447 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.53□□□□□ -0.88
YBX3-208ENST00000540447 SLC27A2O14975 620 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 CARSP49589 748 aaKnown RBP9.53□□□□□ -0.88
YBX3-208ENST00000540447 MRPL28Q13084 256 aaKnown RBP9.53□□□□□ -0.88
YBX3-208ENST00000540447 SPATA1Q5VX52 437 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 NAA35Q5VZE5 725 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 OTUD6AQ7L8S5 288 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 FAM186BQ8IYM0 893 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 FAM133AQ8N9E0 248 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 CCDC124Q96CT7 223 aaKnown RBP9.53□□□□□ -0.88
YBX3-208ENST00000540447 SERTAD1Q9UHV2 236 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 E2F6O75461 281 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 IRAK1P51617 712 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 ITGB3BPQ13352 177 aaPredicted RBP9.53□□□□□ -0.88
YBX3-208ENST00000540447 FLOT2Q14254 428 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 GLE1Q53GS7 698 aaKnown RBP9.53□□□□□ -0.88
YBX3-208ENST00000540447 SARM1Q6SZW1 724 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 GSDMAQ96QA5 445 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 WDR91A4D1P6 747 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 YY1P25490 414 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 CALML3P27482 149 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 SMAPO00193 183 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 SCG2P13521 617 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 EIF2B2P49770 351 aaKnown RBP9.53□□□□□ -0.88
YBX3-208ENST00000540447 ANKRD13CQ8N6S4 541 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 FMO2Q99518 471 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 VAT1LQ9HCJ6 419 aa9.53□□□□□ -0.88
YBX3-208ENST00000540447 NCOA2Q15596 1464 aa9.52□□□□□ -0.88
YBX3-208ENST00000540447 HAUS5O94927 633 aa9.52□□□□□ -0.88
YBX3-208ENST00000540447 CRACR2BQ8N4Y2 399 aaPredicted RBP9.52□□□□□ -0.88
YBX3-208ENST00000540447 JAK2O60674 1132 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 MAP4P27816 1152 aaKnown RBP9.52□□□□□ -0.89
YBX3-208ENST00000540447 PLA2G4AP47712 749 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 SERPINB10P48595 397 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 PDE1BQ01064 536 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 CCDC85AQ96PX6 553 aaPredicted RBP9.52□□□□□ -0.89
YBX3-208ENST00000540447 SEPT3Q9UH03 358 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 BAG5Q9UL15 447 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 CCPG1Q9ULG6 757 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 CAB39Q9Y376 341 aaPredicted RBP9.52□□□□□ -0.89
YBX3-208ENST00000540447 SNX5Q9Y5X3 404 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 CAMSAP2Q08AD1 1489 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 GOLGA8IPA6NC78 632 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 VCAM1P19320 739 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 RASSF7Q02833 373 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 PTPN21Q16825 1174 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 KBTBD12Q3ZCT8 623 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 LIN9Q5TKA1 542 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 OTUD7BQ6GQQ9 843 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 PLA2G4DQ86XP0 818 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 U2AF1L4Q8WU68 220 aaKnown RBP9.52□□□□□ -0.89
YBX3-208ENST00000540447 MAML1Q92585 1016 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 PANX2Q96RD6 677 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 SMYD3Q9H7B4 428 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 TBK1Q9UHD2 729 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 CYTH1Q15438 398 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 DPCR1Q3MIW9 517 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 IFIT1BQ5T764 474 aaKnown RBP9.52□□□□□ -0.89
YBX3-208ENST00000540447 MAML3Q96JK9 1138 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 SNRKQ9NRH2 765 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 A0A0G2JND7 137 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 E7ENQ6 273 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 GNGT2O14610 69 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 ACADSP16219 412 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 MDM2Q00987 491 aaPredicted RBP9.52□□□□□ -0.89
YBX3-208ENST00000540447 ART3Q13508 389 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 KPNB1Q14974 876 aaKnown RBP9.52□□□□□ -0.89
YBX3-208ENST00000540447 PDXDC1Q6P996 788 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 SEC16BQ96JE7 1060 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 NDUFA13Q9P0J0 144 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 NCAPD3P42695 1498 aa9.52□□□□□ -0.89
YBX3-208ENST00000540447 GNAT3A8MTJ3 354 aa9.51□□□□□ -0.89
YBX3-208ENST00000540447 PGRMC1O00264 195 aaKnown RBP9.51□□□□□ -0.89
YBX3-208ENST00000540447 KCNB1Q14721 858 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms