RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 NAPAP54920 295 aa21.78■■□□□ 1.08
TNFRSF1A-213ENST00000540022 CRHR2Q13324 411 aa21.78■■□□□ 1.08
TNFRSF1A-213ENST00000540022 TRIM29Q14134 588 aa21.78■■□□□ 1.08
TNFRSF1A-213ENST00000540022 TAF1CQ15572 869 aaPredicted RBP21.78■■□□□ 1.08
TNFRSF1A-213ENST00000540022 PHF20Q9BVI0 1012 aa21.78■■□□□ 1.08
TNFRSF1A-213ENST00000540022 BTBD7Q9P203 1132 aa21.78■■□□□ 1.08
TNFRSF1A-213ENST00000540022 CCPG1Q9ULG6 757 aa21.78■■□□□ 1.08
TNFRSF1A-213ENST00000540022 CIZ1Q9ULV3 898 aaPredicted RBP21.78■■□□□ 1.08
TNFRSF1A-213ENST00000540022 CTU1Q7Z7A3 348 aaKnown RBP21.77■■□□□ 1.08
TNFRSF1A-213ENST00000540022 ATP2A1O14983 1001 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 CNMDO75829 334 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 MMP1P03956 469 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 OAZ1P54368 228 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 NLRP5P59047 1200 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 NPY5RQ15761 445 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 MB21D1Q8N884 522 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 RGS22Q8NE09 1264 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 CCDC148Q8NFR7 591 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 CHMP5Q9NZZ3 219 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 RBPJLQ9UBG7 517 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ZDHHC9Q9Y397 364 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 PARP14Q460N5 1801 aa21.76■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ADAMTS3O15072 1205 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 FKTNO75072 461 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 BRD1O95696 1058 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 PDIA4P13667 645 aaKnown RBP21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 PPP1R18Q6NYC8 613 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 FAM177A1Q8N128 213 aaPredicted RBP21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 SMCR8Q8TEV9 937 aaPredicted RBP21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 CCDC12Q8WUD4 166 aaPredicted RBP21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 PARK7Q99497 189 aaKnown RBP21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 PAGR1Q9BTK6 254 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ZMYND12Q9H0C1 365 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 TXNRD2Q9NNW7 524 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ZCCHC17Q9NP64 241 aaKnown RBP21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ESYT2A0FGR8 921 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 SMCO2A6NFE2 343 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 STAT3P40763 770 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 NUCB2P80303 420 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 TRAF1Q13077 416 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 FOXD4L5Q5VV16 416 aaPredicted RBP21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 SNRNP48Q6IEG0 339 aaKnown RBP21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 FOXD4L4Q8WXT5 416 aaPredicted RBP21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ADGRA2Q96PE1 1338 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 TEX13BQ9BXU2 312 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 RABGAP1Q9Y3P9 1069 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 RIPK3Q9Y572 518 aa21.75■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ABCB11O95342 1321 aa21.74■■□□□ 1.07
TNFRSF1A-213ENST00000540022 OPLAHO14841 1288 aa21.74■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ALAS1P13196 640 aa21.74■■□□□ 1.07
TNFRSF1A-213ENST00000540022 PLS1Q14651 629 aa21.74■■□□□ 1.07
TNFRSF1A-213ENST00000540022 DIS3L2Q8IYB7 885 aaKnown RBP21.74■■□□□ 1.07
TNFRSF1A-213ENST00000540022 OXER1Q8TDS5 423 aa21.74■■□□□ 1.07
TNFRSF1A-213ENST00000540022 CPA4Q9UI42 421 aa21.74■■□□□ 1.07
TNFRSF1A-213ENST00000540022 PNMA2Q9UL42 364 aa21.74■■□□□ 1.07
TNFRSF1A-213ENST00000540022 HTTP42858 3142 aa21.74■■□□□ 1.07
TNFRSF1A-213ENST00000540022 BTBD18B2RXH4 712 aa21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ZSCAN22P10073 491 aaPredicted RBP21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 CALML3P27482 149 aa21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 FERMT3Q86UX7 667 aa21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 GTF3C2Q8WUA4 911 aaPredicted RBP21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 SPATC1LQ9H0A9 340 aa21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ZFYVE28Q9HCC9 887 aa21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 C6orf50Q9HD87 102 aa21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 PCDHA4Q9UN74 947 aa21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 MRPL11Q9Y3B7 192 aaKnown RBP21.73■■□□□ 1.07
TNFRSF1A-213ENST00000540022 A0A0G2JMZ2 1700 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 KIF28PB7ZC32 967 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 Q3C1V9 767 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 MUM1L1Q5H9M0 696 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 MCTP1Q6DN14 999 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 DAGLBQ8NCG7 672 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 CLEC4DQ8WXI8 215 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 PSTPIP2Q9H939 334 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 HOMER2Q9NSB8 354 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 CENPFP49454 3210 aa21.72■■□□□ 1.07
TNFRSF1A-213ENST00000540022 TLR2O60603 784 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 GNA11P29992 359 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 KRT2P35908 639 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 GCLCP48506 637 aaPredicted RBP21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ADCY7P51828 1080 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 NR5A1Q13285 461 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 SAFBQ15424 915 aaKnown RBP eCLIP21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 GALNT17Q6IS24 598 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 RIOX2Q8IUF8 465 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 BLIDQ8IZY5 108 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 ANKRD13CQ8N6S4 541 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 TRERF1Q96PN7 1200 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 RIC8AQ9NPQ8 531 aa21.71■■□□□ 1.07
TNFRSF1A-213ENST00000540022 M0R2N6 131 aa21.7■■□□□ 1.07
TNFRSF1A-213ENST00000540022 NFIBO00712 420 aa21.7■■□□□ 1.07
TNFRSF1A-213ENST00000540022 F13A1P00488 732 aa21.7■■□□□ 1.07
TNFRSF1A-213ENST00000540022 RESTQ13127 1097 aa21.7■■□□□ 1.07
TNFRSF1A-213ENST00000540022 C17orf99Q6UX52 265 aa21.7■■□□□ 1.07
TNFRSF1A-213ENST00000540022 TBC1D5Q92609 795 aa21.7■■□□□ 1.07
TNFRSF1A-213ENST00000540022 CUL5Q93034 780 aa21.7■■□□□ 1.07
TNFRSF1A-213ENST00000540022 MOV10L1Q9BXT6 1211 aaKnown RBP21.7■■□□□ 1.07
TNFRSF1A-213ENST00000540022 RNF146Q9NTX7 359 aa21.7■■□□□ 1.07
TNFRSF1A-213ENST00000540022 MYH6P13533 1939 aa21.7■■□□□ 1.06
TNFRSF1A-213ENST00000540022 CCDC85CA6NKD9 419 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms