RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 LY9Q9HBG7 655 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 SENP2Q9HC62 589 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 FLRT1Q9NZU1 646 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 ELP1O95163 1332 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 CPLX1O14810 134 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 HMGCRP04035 888 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 TPRNQ4KMQ1 711 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 KCTD1Q719H9 257 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 GMCL1P1Q8NEA9 526 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 REPS2Q8NFH8 660 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 SCAND2PQ9GZW5 306 aaPredicted RBP13.78□□□□□ -0.2
CLIP1-208ENST00000537004 ZNF214Q9UL59 606 aaPredicted RBP13.78□□□□□ -0.2
CLIP1-208ENST00000537004 IVNS1ABPQ9Y6Y0 642 aa13.78□□□□□ -0.2
CLIP1-208ENST00000537004 IFIT3O14879 490 aaKnown RBP13.77□□□□□ -0.21
CLIP1-208ENST00000537004 RGS2P41220 211 aa13.77□□□□□ -0.21
CLIP1-208ENST00000537004 LIFRP42702 1097 aa13.77□□□□□ -0.21
CLIP1-208ENST00000537004 METAP2P50579 478 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLIP1-208ENST00000537004 MAP2K5Q13163 448 aa13.77□□□□□ -0.21
CLIP1-208ENST00000537004 GRB14Q14449 540 aa13.77□□□□□ -0.21
CLIP1-208ENST00000537004 NFXL1Q6ZNB6 911 aa13.77□□□□□ -0.21
CLIP1-208ENST00000537004 NPLOC4Q8TAT6 608 aa13.77□□□□□ -0.21
CLIP1-208ENST00000537004 DEFB118Q96PH6 123 aa13.77□□□□□ -0.21
CLIP1-208ENST00000537004 PLXNB2O15031 1838 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 TMEM232C9JQI7 657 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 GJB1P08034 283 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 BMP3P12645 472 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 XRCC5P13010 732 aaKnown RBP13.76□□□□□ -0.21
CLIP1-208ENST00000537004 ADORA2AP29274 412 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 SLC1A4P43007 532 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 LRSAM1Q6UWE0 723 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 CPXCR1Q8N123 301 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 PRPF38AQ8NAV1 312 aaKnown RBP13.76□□□□□ -0.21
CLIP1-208ENST00000537004 U2AF1L4Q8WU68 220 aaKnown RBP13.76□□□□□ -0.21
CLIP1-208ENST00000537004 APBA2Q99767 749 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 TFIP11Q9UBB9 837 aaKnown RBP13.76□□□□□ -0.21
CLIP1-208ENST00000537004 RIPK3Q9Y572 518 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 SLC15A5A6NIM6 579 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 ZBTB43O43298 467 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 COBLO75128 1261 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 PRKAR2AP13861 404 aaKnown RBP13.76□□□□□ -0.21
CLIP1-208ENST00000537004 STAT3P40763 770 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 GJA8P48165 433 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 NOVP48745 357 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 SNAP25P60880 206 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 SART3Q15020 963 aaKnown RBP13.76□□□□□ -0.21
CLIP1-208ENST00000537004 RCSD1Q6JBY9 416 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 MICU3Q86XE3 530 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 SPATA32Q96LK8 384 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 TMEM47Q9BQJ4 181 aa13.76□□□□□ -0.21
CLIP1-208ENST00000537004 ORC3Q9UBD5 711 aaPredicted RBP13.76□□□□□ -0.21
CLIP1-208ENST00000537004 CEP290O15078 2479 aa13.75□□□□□ -0.21
CLIP1-208ENST00000537004 RXRAP19793 462 aa13.75□□□□□ -0.21
CLIP1-208ENST00000537004 CACNB2Q08289 660 aaPredicted RBP13.75□□□□□ -0.21
CLIP1-208ENST00000537004 MTA3Q9BTC8 594 aa13.75□□□□□ -0.21
CLIP1-208ENST00000537004 RAVER2Q9HCJ3 691 aaKnown RBP13.75□□□□□ -0.21
CLIP1-208ENST00000537004 PAK6Q9NQU5 681 aaPredicted RBP13.75□□□□□ -0.21
CLIP1-208ENST00000537004 SYNPO2Q9UMS6 1093 aa13.75□□□□□ -0.21
CLIP1-208ENST00000537004 LAMA3Q16787 3333 aa13.75□□□□□ -0.21
CLIP1-208ENST00000537004 CCDC69A6NI79 296 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 CDKL5O76039 1030 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 PGK2P07205 417 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 CYP2C19P33261 490 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 ADD1P35611 737 aaKnown RBP13.74□□□□□ -0.21
CLIP1-208ENST00000537004 GUCY1B3Q02153 619 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 IKQ13123 557 aaPredicted RBP13.74□□□□□ -0.21
CLIP1-208ENST00000537004 CCDC183Q5T5S1 534 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 SNRNP48Q6IEG0 339 aaKnown RBP13.74□□□□□ -0.21
CLIP1-208ENST00000537004 TTBK2Q6IQ55 1244 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 DPP9Q86TI2 863 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 SHCBP1Q8NEM2 672 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 LEO1Q8WVC0 666 aaPredicted RBP13.74□□□□□ -0.21
CLIP1-208ENST00000537004 ESR2Q92731 530 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 GMCL1Q96IK5 515 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 C8orf76Q96K31 380 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.74□□□□□ -0.21
CLIP1-208ENST00000537004 MROH8Q9H579 483 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 FEM1BQ9UK73 627 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 SLC12A7Q9Y666 1083 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 ERICH2A1L162 156 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 GOLGA8AA7E2F4 631 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 SGPL1O95470 568 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 CCND3P30281 292 aaPredicted RBP13.74□□□□□ -0.21
CLIP1-208ENST00000537004 STAT2P52630 851 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 WTAPQ15007 396 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 MAP3K21Q5TCX8 1036 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 RIOX2Q8IUF8 465 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 MYL10Q9BUA6 226 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 SLC38A10Q9HBR0 1119 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 TCP11L1Q9NUJ3 509 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 CFAP45Q9UL16 551 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 MYH4Q9Y623 1939 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 FRMPD2Q68DX3 1309 aaPredicted RBP13.74□□□□□ -0.21
CLIP1-208ENST00000537004 RPTORQ8N122 1335 aa13.74□□□□□ -0.21
CLIP1-208ENST00000537004 A0A0G2JMZ2 1700 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 LAMA2P24043 3122 aaKnown RBP13.73□□□□□ -0.21
CLIP1-208ENST00000537004 STRNO43815 780 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 HOXC6P09630 235 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 TAL1P17542 331 aaPredicted RBP13.73□□□□□ -0.21
CLIP1-208ENST00000537004 CDC27P30260 824 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 SLC16A2P36021 539 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms