RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	SV2C	Q496J9	727 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	RTP2	Q5QGT7	225 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	SLCO6A1	Q86UG4	719 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	ANKLE2	Q86XL3	938 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	ARHGEF39	Q8N4T4	335 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	KCNN1	Q92952	543 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	TOX2	Q96NM4	488 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	FCRL3	Q96P31	734 aa	Predicted RBP	4.41	□□□□□ -1.7
CD44-238	ENST00000534296	TRIM55	Q9BYV6	548 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	EPN3	Q9H201	632 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	ZNF408	Q9H9D4	720 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	SP110	Q9HB58	689 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	SIRT5	Q9NXA8	310 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	EBF1	Q9UH73	591 aa		4.41	□□□□□ -1.7
CD44-238	ENST00000534296	KRTAP4-8	A0A0G2JLE6	195 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	C2orf71	A6NGG8	1288 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	RFXAP	O00287	272 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	AURKA	O14965	403 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	STK10	O94804	968 aa	Known RBP	4.4	□□□□□ -1.71
CD44-238	ENST00000534296	KCNH1	O95259	989 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	IFNGR1	P15260	489 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	PAM	P19021	973 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	L1CAM	P32004	1257 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	MESP2	Q0VG99	397 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	C6orf15	Q6UXA7	325 aa	Predicted RBP	4.4	□□□□□ -1.71
CD44-238	ENST00000534296	NPM2	Q86SE8	214 aa	Known RBP	4.4	□□□□□ -1.71
CD44-238	ENST00000534296	MCF2L2	Q86YR7	1114 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	CKAP2L	Q8IYA6	745 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	4.4	□□□□□ -1.71
CD44-238	ENST00000534296	GML	Q99445	158 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	IMPACT	Q9P2X3	320 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	ACSL6	Q9UKU0	697 aa		4.4	□□□□□ -1.71
CD44-238	ENST00000534296	NPHP3-ACAD11	A0A0J9YXS1	232 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	DBX1	A6NMT0	343 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	GLDC	P23378	1020 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	ETFB	P38117	255 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	ERVFRD-1	P60508	538 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	NR1I3	Q14994	352 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	RAB3GAP1	Q15042	981 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	NAALADL2	Q58DX5	795 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	BICRAL	Q6AI39	1079 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	ANKS3	Q6ZW76	656 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	SHISA4	Q96DD7	197 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	JMJD8	Q96S16	334 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	PLCD4	Q9BRC7	762 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	ZNF552	Q9H707	407 aa	Predicted RBP	4.39	□□□□□ -1.71
CD44-238	ENST00000534296	PDLIM7	Q9NR12	457 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	IGSF5	Q9NSI5	407 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	DBR1	Q9UK59	544 aa	Known RBP	4.39	□□□□□ -1.71
CD44-238	ENST00000534296	EMC9	Q9Y3B6	208 aa		4.39	□□□□□ -1.71
CD44-238	ENST00000534296	TEX51	A0A1B0GUA7	166 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	IQCA1L	A6NCM1	817 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	NUDT19	A8MXV4	375 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	SUSD5	O60279	629 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	NPHS1	O60500	1241 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	VAMP4	O75379	141 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	ATP2B1	P20020	1258 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	SRSF3	P84103	164 aa	Known RBP	4.38	□□□□□ -1.71
CD44-238	ENST00000534296	ZNF124	Q15973	351 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	IQCE	Q6IPM2	695 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	TRIM59	Q8IWR1	403 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	CCDC140	Q96MF4	163 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	C8orf37	Q96NL8	207 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	TANGO6	Q9C0B7	1094 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	APEX2	Q9UBZ4	518 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	NUDT5	Q9UKK9	219 aa		4.38	□□□□□ -1.71
CD44-238	ENST00000534296	NOTO	A8MTQ0	251 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	MYO1B	O43795	1136 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	CP	P00450	1065 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	CYBB	P04839	570 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	MED14OS	P0DP75	135 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	GALK1	P51570	392 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	SCRN1	Q12765	414 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	SF3A1	Q15459	793 aa	Known RBP	4.37	□□□□□ -1.71
CD44-238	ENST00000534296	DDR2	Q16832	855 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	GTF2IRD2B	Q6EKJ0	949 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	CIAPIN1	Q6FI81	312 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	ZC3H14	Q6PJT7	736 aa	Known RBP	4.37	□□□□□ -1.71
CD44-238	ENST00000534296	ATG14	Q6ZNE5	492 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	GTF2IRD2	Q86UP8	949 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	LZTR1	Q8N653	840 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	USP33	Q8TEY7	942 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	HNRNPLL	Q8WVV9	542 aa	Known RBP	4.37	□□□□□ -1.71
CD44-238	ENST00000534296	MCOLN1	Q9GZU1	580 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	TNFRSF12A	Q9NP84	129 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	CYP26B1	Q9NR63	512 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296	SUSD2	Q9UGT4	822 aa		4.37	□□□□□ -1.71
CD44-238	ENST00000534296		B2RBV5	119 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	ETV2	O00321	342 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-238	ENST00000534296	SRGAP3	O43295	1099 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	GJB6	O95452	261 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	SNRPB2	P08579	225 aa	Known RBP	4.36	□□□□□ -1.71
CD44-238	ENST00000534296	HOXC12	P31275	282 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	KCNJ6	P48051	423 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	MAPKAPK2	P49137	400 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	YBX1	P67809	324 aa	Known RBP	4.36	□□□□□ -1.71
CD44-238	ENST00000534296	DLG4	P78352	724 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	KCNAB2	Q13303	367 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	KCNA10	Q16322	511 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	KRTAP19-4	Q3LI73	84 aa		4.36	□□□□□ -1.71

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