RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 CYP7A1P22680 504 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 SSTR3P32745 418 aaPredicted RBP10.01□□□□□ -0.81
CD44-232ENST00000531118 TAP1Q03518 808 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 GABPAQ06546 454 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 TTC39AQ5SRH9 613 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 SPRED2Q7Z698 418 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 SLC43A3Q8NBI5 491 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 REPS2Q8NFH8 660 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 GDPD5Q8WTR4 605 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 SCLYQ96I15 445 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 SLC9A7Q96T83 725 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 MEIS3Q99687 375 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 UBE2ZQ9H832 354 aaPredicted RBP10.01□□□□□ -0.81
CD44-232ENST00000531118 VCPKMTQ9H867 229 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 PIH1D3Q9NQM4 214 aaKnown RBP10.01□□□□□ -0.81
CD44-232ENST00000531118 ZNF214Q9UL59 606 aaPredicted RBP10.01□□□□□ -0.81
CD44-232ENST00000531118 LCTP09848 1927 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 ATG2AQ2TAZ0 1938 aa10.01□□□□□ -0.81
CD44-232ENST00000531118 B4GALT4O60513 344 aa10□□□□□ -0.81
CD44-232ENST00000531118 IGSF3O75054 1194 aa10□□□□□ -0.81
CD44-232ENST00000531118 IL9P15248 144 aa10□□□□□ -0.81
CD44-232ENST00000531118 PLCD1P51178 756 aa10□□□□□ -0.81
CD44-232ENST00000531118 BEX3Q00994 111 aa10□□□□□ -0.81
CD44-232ENST00000531118 ICA1Q05084 483 aa10□□□□□ -0.81
CD44-232ENST00000531118 PTGDRQ13258 359 aa10□□□□□ -0.81
CD44-232ENST00000531118 MTX1Q13505 466 aa10□□□□□ -0.81
CD44-232ENST00000531118 ACVR2BQ13705 512 aa10□□□□□ -0.81
CD44-232ENST00000531118 GNASQ5JWF2 1037 aa10□□□□□ -0.81
CD44-232ENST00000531118 MAMDC4Q6UXC1 1216 aa10□□□□□ -0.81
CD44-232ENST00000531118 TMEM179Q6ZVK1 233 aa10□□□□□ -0.81
CD44-232ENST00000531118 CERS3Q8IU89 383 aa10□□□□□ -0.81
CD44-232ENST00000531118 RPUSD2Q8IZ73 545 aaKnown RBP10□□□□□ -0.81
CD44-232ENST00000531118 PHOX2BQ99453 314 aa10□□□□□ -0.81
CD44-232ENST00000531118 FBXO28Q9NVF7 368 aa10□□□□□ -0.81
CD44-232ENST00000531118 CDKN2AIPQ9NXV6 580 aaPredicted RBP10□□□□□ -0.81
CD44-232ENST00000531118 ADAMTS5Q9UNA0 930 aa10□□□□□ -0.81
CD44-232ENST00000531118 SCN10AQ9Y5Y9 1956 aa10□□□□□ -0.81
CD44-232ENST00000531118 CFAP54Q96N23 3096 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 GPR37O15354 613 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 DCXO43602 365 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 STAT3P40763 770 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 ZAP70P43403 619 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 PSEN2P49810 448 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 NKX3-2P78367 333 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 HIC1Q14526 733 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 CCDC144BQ3MJ40 725 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 LEXMQ3ZCV2 418 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 CXCL17Q6UXB2 119 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 FGD4Q96M96 766 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 AGBL1Q96MI9 1066 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 DBNDD2Q9BQY9 259 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 SLC4A5Q9BY07 1137 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 SH2D4AQ9H788 454 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 ARHGEF10LQ9HCE6 1279 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 PPP1R9AQ9ULJ8 1098 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 HDAC5Q9UQL6 1122 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 ASTN1O14525 1302 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 ZNF536O15090 1300 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 MYH4Q9Y623 1939 aa9.99□□□□□ -0.81
CD44-232ENST00000531118 DNAJC25-GNG10A0A024R161 153 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 VWA5AO00534 786 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 CABYRO75952 493 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 ITGA7Q13683 1181 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 ARMCX2Q7L311 632 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 HERC6Q8IVU3 1022 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 ANKS1AQ92625 1134 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 KATNBL1Q9H079 304 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 TRPV6Q9H1D0 765 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 ABHD16BQ9H3Z7 469 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 NPDC1Q9NQX5 325 aaPredicted RBP9.98□□□□□ -0.81
CD44-232ENST00000531118 TMX2Q9Y320 296 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 GRIN2DO15399 1336 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 CACNA1BQ00975 2339 aa9.98□□□□□ -0.81
CD44-232ENST00000531118 TRIP12Q14669 1992 aaPredicted RBP9.97□□□□□ -0.81
CD44-232ENST00000531118 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.97□□□□□ -0.81
CD44-232ENST00000531118 TK2O00142 265 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 IDH1O75874 414 aaKnown RBP9.97□□□□□ -0.81
CD44-232ENST00000531118 POLR3DP05423 398 aaPredicted RBP9.97□□□□□ -0.81
CD44-232ENST00000531118 ACTN1P12814 892 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 AKR1B1P15121 316 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 KCNA5P22460 613 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 LSM11P83369 360 aaKnown RBP eCLIP9.97□□□□□ -0.81
CD44-232ENST00000531118 SNRNP48Q6IEG0 339 aaKnown RBP9.97□□□□□ -0.81
CD44-232ENST00000531118 PTCRAQ6ISU1 281 aaPredicted RBP9.97□□□□□ -0.81
CD44-232ENST00000531118 HFE2Q6ZVN8 426 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 DEFB128Q7Z7B8 93 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 TLK2Q86UE8 772 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 MAGEB6Q8N7X4 407 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 PRSS33Q8NF86 280 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.97□□□□□ -0.81
CD44-232ENST00000531118 TEX13BQ9BXU2 312 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 SEZ6LQ9BYH1 1024 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 MRS2Q9HD23 443 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 SMC4Q9NTJ3 1288 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 LMCD1Q9NZU5 365 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 FAM186AA6NE01 2351 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 PLXNA3P51805 1871 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 NLRC5Q86WI3 1866 aa9.97□□□□□ -0.81
CD44-232ENST00000531118 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.96□□□□□ -0.82
CD44-232ENST00000531118 PSMC6P62333 389 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 539 ms