RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TTI2Q6NXR4 508 aa23.83■■□□□ 1.41
VPS28-205ENST00000526204 USP17L2Q6R6M4 530 aa23.83■■□□□ 1.41
VPS28-205ENST00000526204 C7orf25Q9BPX7 421 aa23.83■■□□□ 1.41
VPS28-205ENST00000526204 RNF225M0QZC1 329 aaPredicted RBP23.83■■□□□ 1.4
VPS28-205ENST00000526204 DNM2P50570 870 aa23.83■■□□□ 1.4
VPS28-205ENST00000526204 PMS1P54277 932 aaKnown RBP23.83■■□□□ 1.4
VPS28-205ENST00000526204 CHMP4BP1P59074 171 aa23.83■■□□□ 1.4
VPS28-205ENST00000526204 TSR1Q2NL82 804 aaKnown RBP23.83■■□□□ 1.4
VPS28-205ENST00000526204 MFSD14BQ5SR56 506 aa23.83■■□□□ 1.4
VPS28-205ENST00000526204 FAM182BQ5T319 152 aa23.83■■□□□ 1.4
VPS28-205ENST00000526204 ACRBPQ8NEB7 543 aa23.83■■□□□ 1.4
VPS28-205ENST00000526204 ZNF507Q8TCN5 953 aa23.83■■□□□ 1.4
VPS28-205ENST00000526204 CEP95Q96GE4 821 aa23.83■■□□□ 1.4
VPS28-205ENST00000526204 PLIN2Q99541 437 aa23.83■■□□□ 1.4
VPS28-205ENST00000526204 PODXL2Q9NZ53 605 aa23.83■■□□□ 1.4
VPS28-205ENST00000526204 LUC7L2Q9Y383 392 aaKnown RBP23.83■■□□□ 1.4
VPS28-205ENST00000526204 THSD7AQ9UPZ6 1657 aa23.82■■□□□ 1.4
VPS28-205ENST00000526204 GAKO14976 1311 aa23.82■■□□□ 1.4
VPS28-205ENST00000526204 KIF4BQ2VIQ3 1234 aa23.82■■□□□ 1.4
VPS28-205ENST00000526204 TRIM9Q9C026 710 aa23.82■■□□□ 1.4
VPS28-205ENST00000526204 EXOC1Q9NV70 894 aa23.82■■□□□ 1.4
VPS28-205ENST00000526204 TAF1LQ8IZX4 1826 aa23.82■■□□□ 1.4
VPS28-205ENST00000526204 LY75O60449 1722 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 A0A0U1RQJ8 604 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 CC2D1AQ6P1N0 951 aaPredicted RBP23.81■■□□□ 1.4
VPS28-205ENST00000526204 FAM114A1Q8IWE2 563 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 ATRIPQ8WXE1 791 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 DNAJC7Q99615 494 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 PARD6BQ9BYG5 372 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 ARFGAP3Q9NP61 516 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 CAPN11Q9UMQ6 739 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 REXO1Q8N1G1 1221 aaKnown RBP23.81■■□□□ 1.4
VPS28-205ENST00000526204 CSGALNACT2Q8N6G5 542 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 PKNOX2Q96KN3 472 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 NAPGQ99747 312 aaPredicted RBP23.81■■□□□ 1.4
VPS28-205ENST00000526204 CPVLQ9H3G5 476 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 RIOX1Q9H6W3 641 aa23.81■■□□□ 1.4
VPS28-205ENST00000526204 EPN1Q9Y6I3 576 aaPredicted RBP23.81■■□□□ 1.4
VPS28-205ENST00000526204 TTC26A0AVF1 554 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 POTEB2H3BUK9 544 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 CCNE1P24864 410 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 RETREG2Q8NC44 543 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 P2RX5Q93086 422 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 NDUFA10O95299 355 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 ARHGAP25P42331 645 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 COBLL1Q53SF7 1204 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 ZNF771Q7L3S4 317 aaPredicted RBP23.8■■□□□ 1.4
VPS28-205ENST00000526204 SLC35F6Q8N357 371 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 TBCKQ8TEA7 893 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 LRRC15Q8TF66 581 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 CALML4Q96GE6 196 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 PIGSQ96S52 555 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 NUP58Q9BVL2 599 aa23.8■■□□□ 1.4
VPS28-205ENST00000526204 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.79■■□□□ 1.4
VPS28-205ENST00000526204 PES1O00541 588 aaKnown RBP23.79■■□□□ 1.4
VPS28-205ENST00000526204 SRGNP10124 158 aa23.79■■□□□ 1.4
VPS28-205ENST00000526204 PLA2G4AP47712 749 aa23.79■■□□□ 1.4
VPS28-205ENST00000526204 PDE4DQ08499 809 aa23.79■■□□□ 1.4
VPS28-205ENST00000526204 PLIN4Q96Q06 1357 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 BRD3Q15059 726 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 DUSP9Q99956 384 aaKnown RBP23.78■■□□□ 1.4
VPS28-205ENST00000526204 SLF1Q9BQI6 1058 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 TUBGCP2Q9BSJ2 902 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 EPC1Q9H2F5 836 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 VAT1LQ9HCJ6 419 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 DDX60LQ5H9U9 1706 aaKnown RBP23.78■■□□□ 1.4
VPS28-205ENST00000526204 CCDC151A5D8V7 595 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 SERPINB2P05120 415 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 TECP42680 631 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 ASIC1P78348 528 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 WHAMMP3Q1A5X7 153 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 ASPRV1Q53RT3 343 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 CNNM4Q6P4Q7 775 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 TBC1D16Q8TBP0 767 aa23.78■■□□□ 1.4
VPS28-205ENST00000526204 USP17L5A8MUK1 530 aa23.77■■□□□ 1.4
VPS28-205ENST00000526204 HOXA10P31260 410 aaPredicted RBP23.77■■□□□ 1.4
VPS28-205ENST00000526204 CHP1Q99653 195 aa23.77■■□□□ 1.4
VPS28-205ENST00000526204 SEC31AO94979 1220 aaKnown RBP23.77■■□□□ 1.4
VPS28-205ENST00000526204 TBC1D8O95759 1140 aa23.77■■□□□ 1.4
VPS28-205ENST00000526204 PDHBP11177 359 aa23.77■■□□□ 1.4
VPS28-205ENST00000526204 GYS1P13807 737 aa23.77■■□□□ 1.4
VPS28-205ENST00000526204 HAUS4Q9H6D7 363 aa23.77■■□□□ 1.4
VPS28-205ENST00000526204 MTMR4Q9NYA4 1195 aa23.77■■□□□ 1.4
VPS28-205ENST00000526204 BIN2Q9UBW5 565 aaPredicted RBP23.77■■□□□ 1.4
VPS28-205ENST00000526204 POLLQ9UGP5 575 aa23.77■■□□□ 1.4
VPS28-205ENST00000526204 ZHX1Q9UKY1 873 aaPredicted RBP23.77■■□□□ 1.4
VPS28-205ENST00000526204 CRAMP1Q96RY5 1269 aa23.76■■□□□ 1.39
VPS28-205ENST00000526204 STK17AQ9UEE5 414 aa23.76■■□□□ 1.39
VPS28-205ENST00000526204 SPATA31A6Q5VVP1 1343 aa23.76■■□□□ 1.39
VPS28-205ENST00000526204 HOXA7P31268 230 aaPredicted RBP23.75■■□□□ 1.39
VPS28-205ENST00000526204 FXR2P51116 673 aaKnown RBP eCLIP23.75■■□□□ 1.39
VPS28-205ENST00000526204 KRT83P78385 493 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 STK4Q13043 487 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 MEA1Q16626 185 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 ANKRD40Q6AI12 368 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 TMC4Q7Z404 712 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 MTMR9Q96QG7 549 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 MMTAG2Q9BU76 263 aaKnown RBP23.75■■□□□ 1.39
VPS28-205ENST00000526204 LRRC4BQ9NT99 713 aa23.75■■□□□ 1.39
VPS28-205ENST00000526204 ZNHIT6Q9NWK9 470 aaKnown RBP23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms