RNA–Protein interactions for RNA: ENST00000515572.5

SNF8-215, Transcript of SNF8, ESCRT-II complex subunit, human

TSL 2

Gene SNF8, Length 687 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNF8-215	ENST00000515572	HOMER1	Q86YM7	354 aa		13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	TRMT44	Q8IYL2	757 aa	Known RBP	13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	PXYLP1	Q8TE99	480 aa		13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	USP6NL	Q92738	828 aa		13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	PIGS	Q96S52	555 aa		13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	APBA2	Q99767	749 aa		13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	HOMER2	Q9NSB8	354 aa		13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	GABRQ	Q9UN88	632 aa		13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	PFAS	O15067	1338 aa		13.79	□□□□□ -0.2
SNF8-215	ENST00000515572	ST18	O60284	1047 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	HOXC6	P09630	235 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	CDC27	P30260	824 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	ADD1	P35611	737 aa	Known RBP	13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	USH1G	Q495M9	461 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	CPLX2	Q6PUV4	134 aa	Known RBP	13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	DPP9	Q86TI2	863 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	CMTR1	Q8N1G2	835 aa	Known RBP	13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	ANKRD35	Q8N283	1001 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	SLAIN1	Q8ND83	568 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	DDX11	Q96FC9	970 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	MCOLN1	Q9GZU1	580 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	RBM27	Q9P2N5	1060 aa	Known RBP	13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	TPCN1	Q9ULQ1	816 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	MRPL11	Q9Y3B7	192 aa	Known RBP	13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	PCDHA1	Q9Y5I3	950 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	PTCH2	Q9Y6C5	1203 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	CNTNAP5	Q8WYK1	1306 aa		13.78	□□□□□ -0.2
SNF8-215	ENST00000515572	CPLX1	O14810	134 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	PPP1R11	O60927	126 aa	Predicted RBP	13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	IFNAR1	P17181	557 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	CCT2	P78371	535 aa	Known RBP	13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	FUT2	Q10981	343 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	MUM1L1	Q5H9M0	696 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	MCF2L2	Q86YR7	1114 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	CCDC82	Q8N4S0	544 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	SAMD3	Q8N6K7	520 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	RGS22	Q8NE09	1264 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	CLEC4D	Q8WXI8	215 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	LARP6	Q9BRS8	491 aa	Known RBP	13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	SLK	Q9H2G2	1235 aa	Predicted RBP	13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	LIMCH1	Q9UPQ0	1083 aa		13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	DIS3	Q9Y2L1	958 aa	Known RBP	13.77	□□□□□ -0.21
SNF8-215	ENST00000515572	DNAJC25-GNG10	A0A024R161	153 aa		13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	hCG_1984214	I3L0E3	225 aa		13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	ADCY3	O60266	1144 aa		13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	PFKFB2	O60825	505 aa		13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	CDKL5	O76039	1030 aa		13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	CYP2B6	P20813	491 aa		13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	STK3	Q13188	491 aa		13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	SLC9C1	Q4G0N8	1177 aa		13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	ZNF713	Q8N859	430 aa	Predicted RBP	13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	RNF26	Q9BY78	433 aa	Predicted RBP	13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	NCOA5	Q9HCD5	579 aa	Known RBP	13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	A1CF	Q9NQ94	594 aa	Known RBP	13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	MAP3K20	Q9NYL2	800 aa	Known RBP	13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	CYP39A1	Q9NYL5	469 aa		13.76	□□□□□ -0.21
SNF8-215	ENST00000515572		V9GY48	417 aa	Predicted RBP	13.76	□□□□□ -0.21
SNF8-215	ENST00000515572	LCT	P09848	1927 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	NFIB	O00712	420 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	COBL	O75128	1261 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	GRK4	P32298	578 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	MCM2	P49736	904 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	AKAP17A	Q02040	695 aa	Known RBP	13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	SCRN1	Q12765	414 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	NTRK3	Q16288	839 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	OLFML2B	Q68BL8	750 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	NSMF	Q6X4W1	530 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	RNF207	Q6ZRF8	634 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	TRIM22	Q8IYM9	498 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	PIBF1	Q8WXW3	757 aa		13.75	□□□□□ -0.21
SNF8-215	ENST00000515572	POTEB2	H3BUK9	544 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	PRPF3	O43395	683 aa	Known RBP	13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	HMGCR	P04035	888 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	PGK2	P07205	417 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	TAL1	P17542	331 aa	Predicted RBP	13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	GHRHR	Q02643	423 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	BAAT	Q14032	418 aa	Predicted RBP	13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	ME3	Q16798	604 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	PFKFB3	Q16875	520 aa	Predicted RBP	13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	ZNF792	Q3KQV3	632 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	NOL8	Q76FK4	1167 aa	Known RBP	13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	TEX2	Q8IWB9	1127 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	MSL3	Q8N5Y2	521 aa	Known RBP	13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	FAM133A	Q8N9E0	248 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	NPLOC4	Q8TAT6	608 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	TRIB2	Q92519	343 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	GTF3C6	Q969F1	213 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	MAML3	Q96JK9	1138 aa		13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.74	□□□□□ -0.21
SNF8-215	ENST00000515572	LOC102724159	A0A0B4J2E5	919 aa		13.73	□□□□□ -0.21
SNF8-215	ENST00000515572	hCG_1642624	A0A1W2PR95	340 aa		13.73	□□□□□ -0.21
SNF8-215	ENST00000515572	PTPDC1	A2A3K4	754 aa		13.73	□□□□□ -0.21
SNF8-215	ENST00000515572	SCG2	P13521	617 aa		13.73	□□□□□ -0.21
SNF8-215	ENST00000515572	ELN	P15502	786 aa		13.73	□□□□□ -0.21
SNF8-215	ENST00000515572	RPS6	P62753	249 aa	Known RBP	13.73	□□□□□ -0.21
SNF8-215	ENST00000515572	SSRP1	Q08945	709 aa	Known RBP	13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms