RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TBCKQ8TEA7 893 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 NAP1L4Q99733 375 aaKnown RBP16.69■□□□□ 0.26
NUP54-217ENST00000514987 TUBB2BQ9BVA1 445 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 LRRC27Q9C0I9 530 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 GLT8D2Q9H1C3 349 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 EHD4Q9H223 541 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 VAT1LQ9HCJ6 419 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 OGFRQ9NZT2 677 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 STK17AQ9UEE5 414 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 GDAQ9Y2T3 454 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 URI1O94763 535 aaPredicted RBP16.68■□□□□ 0.26
NUP54-217ENST00000514987 PLCG1P19174 1290 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 HSPA1LP34931 641 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 GNG11P61952 73 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 FKBP1AP62942 108 aaKnown RBP16.68■□□□□ 0.26
NUP54-217ENST00000514987 EXOC1Q9NV70 894 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 ADGRG1Q9Y653 693 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 BRWD3Q6RI45 1802 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 PP2D1A8MPX8 630 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 GYPCP04921 128 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 AKR1B1P15121 316 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 CASP14P31944 242 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 CCT6AP40227 531 aaKnown RBP16.68■□□□□ 0.26
NUP54-217ENST00000514987 ZNF543Q08ER8 600 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 PDIA5Q14554 519 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 CYP26C1Q6V0L0 522 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 RASGRP2Q7LDG7 609 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 MASTLQ96GX5 879 aa16.68■□□□□ 0.26
NUP54-217ENST00000514987 LGALS16A8MUM7 142 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 EFCAB8A8MWE9 144 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 MRPL12P52815 198 aaKnown RBP16.67■□□□□ 0.26
NUP54-217ENST00000514987 HDLBPQ00341 1268 aaKnown RBP16.67■□□□□ 0.26
NUP54-217ENST00000514987 NAA30Q147X3 362 aaPredicted RBP16.67■□□□□ 0.26
NUP54-217ENST00000514987 ELF2Q15723 593 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 CALCRLQ16602 461 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 CNNM4Q6P4Q7 775 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 PODNQ7Z5L7 613 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 CERS5Q8N5B7 392 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 CPLX3Q8WVH0 158 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 UBXN4Q92575 508 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 TRIM47Q96LD4 638 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 MTMR9Q96QG7 549 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 TRIM9Q9C026 710 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 UBA5Q9GZZ9 404 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 VPS16Q9H269 839 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 DHX36Q9H2U1 1008 aaKnown RBP16.67■□□□□ 0.26
NUP54-217ENST00000514987 CPVLQ9H3G5 476 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 RIC8AQ9NPQ8 531 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 TAB2Q9NYJ8 693 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 BIN2Q9UBW5 565 aaPredicted RBP16.67■□□□□ 0.26
NUP54-217ENST00000514987 PARP3Q9Y6F1 533 aa16.67■□□□□ 0.26
NUP54-217ENST00000514987 FRMPD2Q68DX3 1309 aaPredicted RBP16.66■□□□□ 0.26
NUP54-217ENST00000514987 PLSCR1O15162 318 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 SLC26A4O43511 780 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 KIF5CO60282 957 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 CCNE1P24864 410 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 DNM2P50570 870 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 TUBB4BP68371 445 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 MAP3K9P80192 1104 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 UBXN1Q04323 297 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 JAKMIP3Q5VZ66 844 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 PPP4R3AQ6IN85 833 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 CDC42EP5Q6NZY7 148 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 SMAP1Q8IYB5 467 aaPredicted RBP16.66■□□□□ 0.26
NUP54-217ENST00000514987 NUP88Q99567 741 aaPredicted RBP16.66■□□□□ 0.26
NUP54-217ENST00000514987 NUP58Q9BVL2 599 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 ABHD10Q9NUJ1 306 aa16.66■□□□□ 0.26
NUP54-217ENST00000514987 GREB1LQ9C091 1923 aaPredicted RBP16.66■□□□□ 0.26
NUP54-217ENST00000514987 PVALEFA0A1B0GWK0 134 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 SOWAHDA6NJG2 315 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 NPM3O75607 178 aaKnown RBP16.65■□□□□ 0.26
NUP54-217ENST00000514987 GCFC2P16383 781 aaKnown RBP16.65■□□□□ 0.26
NUP54-217ENST00000514987 SHMT1P34896 483 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 TECP42680 631 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 FXR1P51114 621 aaKnown RBP eCLIP16.65■□□□□ 0.26
NUP54-217ENST00000514987 PDE4DQ08499 809 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 TSR1Q2NL82 804 aaKnown RBP16.65■□□□□ 0.26
NUP54-217ENST00000514987 MCTP2Q6DN12 878 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 TTI2Q6NXR4 508 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 RAD9BQ6WBX8 426 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 SV2BQ7L1I2 683 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 LRRC47Q8N1G4 583 aaKnown RBP16.65■□□□□ 0.26
NUP54-217ENST00000514987 PROM2Q8N271 834 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 MB21D1Q8N884 522 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 RETREG2Q8NC44 543 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 CUL5Q93034 780 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 P2RX5Q93086 422 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 IQCDQ96DY2 449 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 ZDHHC15Q96MV8 337 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 DDX4Q9NQI0 724 aaKnown RBP16.65■□□□□ 0.26
NUP54-217ENST00000514987 ARGLU1Q9NWB6 273 aaPredicted RBP16.65■□□□□ 0.26
NUP54-217ENST00000514987 MYO1AQ9UBC5 1043 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 LRWD1Q9UFC0 647 aa16.65■□□□□ 0.26
NUP54-217ENST00000514987 F8W031 263 aaPredicted RBP16.64■□□□□ 0.25
NUP54-217ENST00000514987 ASIC1P78348 528 aa16.64■□□□□ 0.25
NUP54-217ENST00000514987 IRF2BP1Q8IU81 584 aa16.64■□□□□ 0.25
NUP54-217ENST00000514987 AKT1S1Q96B36 256 aa16.64■□□□□ 0.25
NUP54-217ENST00000514987 CDK5RAP3Q96JB5 506 aa16.64■□□□□ 0.25
NUP54-217ENST00000514987 JMJD4Q9H9V9 463 aa16.64■□□□□ 0.25
NUP54-217ENST00000514987 DDX41Q9UJV9 622 aaKnown RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms