RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CTCFLQ8NI51 663 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 TRIB2Q92519 343 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 PHKBQ93100 1093 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 EYSQ5T1H1 3165 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 POTEB2H3BUK9 544 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 NPM3O75607 178 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 GUCY1B3Q02153 619 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 BAATQ14032 418 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 MUM1L1Q5H9M0 696 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 CATIPQ7Z7H3 387 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 PROCA1Q8NCQ7 364 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 PIGSQ96S52 555 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 EHD4Q9H223 541 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 GOLGA8BA8MQT2 603 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 VWA5AO00534 786 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 DNAJC21Q5F1R6 531 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 TMEM63BQ5T3F8 832 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 BLOC1S2Q6QNY1 142 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 NECAB1Q8N987 351 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 NPLOC4Q8TAT6 608 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 NEK1Q96PY6 1258 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 MYCBPQ99417 103 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 CPLX1O14810 134 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 PLEKHA8P1O95397 391 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 BEX3Q00994 111 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 FAM110CQ1W6H9 321 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 NOL9Q5SY16 702 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 WDR18Q9BV38 432 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 KRT23Q9C075 422 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 CNPY2Q9Y2B0 182 aa9.07□□□□□ -0.96
LIMCH1-219ENST00000514096 TOP1P11387 765 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 DSG3P32926 999 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 ADD1P35611 737 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 NEK4P51957 841 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 MLLT1Q03111 559 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 POTEEQ6S8J3 1075 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 Q6ZUG5 572 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 FBXO16Q8IX29 292 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 CHURC1Q8WUH1 139 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 CDK5RAP2Q96SN8 1893 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 CUL9Q8IWT3 2517 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 DDX39AO00148 427 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 GCLCP48506 637 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 BMP2KLQ5H9B9 411 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 U2AF1L4Q8WU68 220 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 DRC1Q96MC2 740 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 FAM161BQ96MY7 647 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 FLRT1Q9NZU1 646 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 PPP1R9AQ9ULJ8 1098 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 ATP11BQ9Y2G3 1177 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 MYH1P12882 1939 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 TESPA1A2RU30 521 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 WDR46O15213 610 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 COBLO75128 1261 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 BCRP11274 1271 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 AKAP17AQ02040 695 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 SBK1Q52WX2 424 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 IFFO2Q5TF58 517 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 SYDE2Q5VT97 1194 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 TEX13BQ9BXU2 312 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 HMX1Q9NP08 348 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 KIF3AQ9Y496 699 aa9.06□□□□□ -0.96
LIMCH1-219ENST00000514096 PAPPA2Q9BXP8 1791 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 PDHBP11177 359 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 MCM5P33992 734 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 CDC37Q16543 378 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 USP17L6PQ6QN14 398 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 OSBPL3Q9H4L5 887 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 GJB4Q9NTQ9 266 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 RABGAP1Q9Y3P9 1069 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 PCDHA1Q9Y5I3 950 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 V9GY48 417 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 SMCHD1A6NHR9 2005 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 GOLGA8AA7E2F4 631 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 DYNC1LI2O43237 492 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 MRE11P49959 708 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 PPP2R5AQ15172 486 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 ADGRF4Q8IZF3 695 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 CCDC97Q96F63 343 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 PDGFCQ9NRA1 345 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 GINS2Q9Y248 185 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 COL6A3P12111 3177 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 REC8O95072 547 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 MDM2Q00987 491 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 UBE2SQ16763 222 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 RASGRP4Q8TDF6 673 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 DSCC1Q9BVC3 393 aa9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 LSG1Q9H089 658 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 SEC63Q9UGP8 760 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 RPAP1Q9BWH6 1393 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-219ENST00000514096 PQBP1O60828 265 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 RGS2P41220 211 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 CACNB2Q08289 660 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 QRICH1Q2TAL8 776 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 RCSD1Q6JBY9 416 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 C7orf61Q8IZ16 206 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 ZNF654Q8IZM8 581 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 COPS5Q92905 334 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 CEP83Q9Y592 693 aa9.04□□□□□ -0.96
LIMCH1-219ENST00000514096 MFSD14CQ5VZR4 134 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms