RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 ME3Q16798 604 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 NOM1Q5C9Z4 860 aaKnown RBP11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 OTOP1Q7RTM1 612 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 GPKOWQ92917 476 aaPredicted RBP eCLIP11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 MAP3K14Q99558 947 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 SPZ1Q9BXG8 430 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 RIOX1Q9H6W3 641 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 RBM28Q9NW13 759 aaKnown RBP11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 ZNF236Q9UL36 1845 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 ZBTB5O15062 677 aa11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 MAPK4P31152 587 aa11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 GNAQP50148 359 aa11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 FUT2Q10981 343 aa11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 ANKRD1Q15327 319 aa11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 PLEKHH3Q7Z736 793 aa11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 COA7Q96BR5 231 aa11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 MTMR8Q96EF0 704 aa11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 TRERF1Q96PN7 1200 aa11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 ALDH8A1Q9H2A2 487 aaPredicted RBP11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 SLKQ9H2G2 1235 aaPredicted RBP11.36□□□□□ -0.59
TOPBP1-209ENST00000513818 ATP2A1O14983 1001 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 ST18O60284 1047 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 PFKFB2O60825 505 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 PGK2P07205 417 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 FDX1P10109 184 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 CYP2B6P20813 491 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 PTPREP23469 700 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 FLT3LGP49771 235 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 RCAN1P53805 252 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 OAZ1P54368 228 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 NTRK3Q16288 839 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 NSMFQ6X4W1 530 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 SLC30A10Q6XR72 485 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 HEATR3Q7Z4Q2 680 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 FBXO11Q86XK2 927 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 CCDC83Q8IWF9 413 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 PLCD3Q8N3E9 789 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 SHCBP1Q8NEM2 672 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 CLEC4DQ8WXI8 215 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 GTF3C6Q969F1 213 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 RRP36Q96EU6 259 aaKnown RBP11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 ZNF274Q96GC6 653 aaPredicted RBP11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 PURBQ96QR8 312 aaKnown RBP11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 MMP19Q99542 508 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 LZTS2Q9BRK4 669 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 SLC26A6Q9BXS9 759 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 MROH8Q9H579 483 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 ACAD9Q9H845 621 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 PRDM10Q9NQV6 1147 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 SEC63Q9UGP8 760 aaKnown RBP11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 PTCH2Q9Y6C5 1203 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 DDX49Q9Y6V7 483 aaKnown RBP11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 IVNS1ABPQ9Y6Y0 642 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 PLXNA1Q9UIW2 1896 aa11.35□□□□□ -0.59
TOPBP1-209ENST00000513818 CPLX1O14810 134 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 JAK2O60674 1132 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 CTDNEP1O95476 244 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 SLC25A27O95847 323 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 ELNP15502 786 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 ADORA2AP29274 412 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 FOSBP53539 338 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 GRB14Q14449 540 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 CCL14Q16627 93 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 MORN1Q5T089 497 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 WWC2Q6AWC2 1192 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 CTU1Q7Z7A3 348 aaKnown RBP11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 TBC1D5Q92609 795 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 AMNQ9BXJ7 453 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 A1CFQ9NQ94 594 aaKnown RBP11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 SRRDQ9UH36 339 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 CIZ1Q9ULV3 898 aaPredicted RBP11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 LIMCH1Q9UPQ0 1083 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 PCDHA1Q9Y5I3 950 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 V9GY48 417 aaPredicted RBP11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 ABCB11O95342 1321 aa11.34□□□□□ -0.59
TOPBP1-209ENST00000513818 ZNFX1Q9P2E3 1918 aaKnown RBP11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 LRRC37A2A6NM11 1700 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 PNMA6FA0A0J9YX94 578 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 CCDC196A0A1B0GTZ2 297 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 PTPDC1A2A3K4 754 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 OPLAHO14841 1288 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 COBLO75128 1261 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 FCER1AP12319 257 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 KCTD2Q14681 263 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 COL13A1Q5TAT6 717 aaPredicted RBP11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 TYW1BQ6NUM6 668 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 ANKRD35Q8N283 1001 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 CHST13Q8NET6 341 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 NPLOC4Q8TAT6 608 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 SOCS4Q8WXH5 440 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 SHISA4Q96DD7 197 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 AIFM3Q96NN9 605 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 GJD2Q9UKL4 321 aa11.33□□□□□ -0.6
TOPBP1-209ENST00000513818 ADAMTS3O15072 1205 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 MYCP01106 439 aaPredicted RBP11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 IFNAR1P17181 557 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 CALML3P27482 149 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 HOXA13P31271 388 aaPredicted RBP11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 COPB2P35606 906 aa11.32□□□□□ -0.6
TOPBP1-209ENST00000513818 CNTN2Q02246 1040 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms