RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 CTDP1Q9Y5B0 961 aaPredicted RBP11.35□□□□□ -0.59
RNF4-221ENST00000513643 PFASO15067 1338 aa11.35□□□□□ -0.59
RNF4-221ENST00000513643 LOC102724159A0A0B4J2E5 919 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 KLRF2D3W0D1 207 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 NFIBO00712 420 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 PRC1O43663 620 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 CYTH3O43739 400 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 SMARCA1P28370 1054 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 MCM5P33992 734 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 WTAPQ15007 396 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 PWP2Q15269 919 aaKnown RBP11.34□□□□□ -0.59
RNF4-221ENST00000513643 ADCK5Q3MIX3 580 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 TMEM67Q5HYA8 995 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 CASC1Q6TDU7 716 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 SGMS1Q86VZ5 419 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 TMTC2Q8N394 836 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 PAWRQ96IZ0 340 aaKnown RBP11.34□□□□□ -0.59
RNF4-221ENST00000513643 HOMER2Q9NSB8 354 aa11.34□□□□□ -0.59
RNF4-221ENST00000513643 POTEB2H3BUK9 544 aa11.33□□□□□ -0.6
RNF4-221ENST00000513643 OPLAHO14841 1288 aa11.33□□□□□ -0.6
RNF4-221ENST00000513643 PPP1R11O60927 126 aaPredicted RBP11.33□□□□□ -0.6
RNF4-221ENST00000513643 EDNRBP24530 442 aa11.33□□□□□ -0.6
RNF4-221ENST00000513643 BAATQ14032 418 aaPredicted RBP11.33□□□□□ -0.6
RNF4-221ENST00000513643 SART3Q15020 963 aaKnown RBP11.33□□□□□ -0.6
RNF4-221ENST00000513643 CDC37Q16543 378 aaPredicted RBP11.33□□□□□ -0.6
RNF4-221ENST00000513643 QRICH1Q2TAL8 776 aa11.33□□□□□ -0.6
RNF4-221ENST00000513643 RNF20Q5VTR2 975 aa11.33□□□□□ -0.6
RNF4-221ENST00000513643 NECAB2Q7Z6G3 386 aa11.33□□□□□ -0.6
RNF4-221ENST00000513643 FBXL16Q8N461 479 aa11.33□□□□□ -0.6
RNF4-221ENST00000513643 NEK1Q96PY6 1258 aa11.33□□□□□ -0.6
RNF4-221ENST00000513643 PURBQ96QR8 312 aaKnown RBP11.33□□□□□ -0.6
RNF4-221ENST00000513643 ABHD16BQ9H3Z7 469 aa11.33□□□□□ -0.6
RNF4-221ENST00000513643 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.33□□□□□ -0.6
RNF4-221ENST00000513643 ERICH2A1L162 156 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 ZBTB5O15062 677 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 DDAH1O94760 285 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 SLC4A3P48751 1232 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 ACVR2BQ13705 512 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 PRPF38BQ5VTL8 546 aaKnown RBP11.32□□□□□ -0.6
RNF4-221ENST00000513643 CCSAPQ6IQ19 270 aaPredicted RBP11.32□□□□□ -0.6
RNF4-221ENST00000513643 ARMCX2Q7L311 632 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 DHX32Q7L7V1 743 aaKnown RBP11.32□□□□□ -0.6
RNF4-221ENST00000513643 CATIPQ7Z7H3 387 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 CCDC144CPQ8IYA2 1237 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 TBC1D5Q92609 795 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 ISY1Q9ULR0 285 aaKnown RBP11.32□□□□□ -0.6
RNF4-221ENST00000513643 LAMA3Q16787 3333 aa11.32□□□□□ -0.6
RNF4-221ENST00000513643 RBM47A0AV96 593 aaKnown RBP11.31□□□□□ -0.6
RNF4-221ENST00000513643 ASB14A6NK59 587 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 DNM1LO00429 736 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 CTAGE5O15320 804 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 ADCY6O43306 1168 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 ADAMTS4O75173 837 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 AKR1A1P14550 325 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 RPS6P62753 249 aaKnown RBP11.31□□□□□ -0.6
RNF4-221ENST00000513643 KRT32Q14532 448 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 TAPT1Q6NXT6 567 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 ZNF654Q8IZM8 581 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 KLHDC9Q8NEP7 349 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 DNERQ8NFT8 737 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 SPZ1Q9BXG8 430 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 USP26Q9BXU7 913 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 AGXT2Q9BYV1 514 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 C11orf49Q9H6J7 331 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 CNPY2Q9Y2B0 182 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 SNX14Q9Y5W7 946 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 PLXNA1Q9UIW2 1896 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 ABCB11O95342 1321 aa11.31□□□□□ -0.6
RNF4-221ENST00000513643 DUSP11O75319 330 aaKnown RBP11.3□□□□□ -0.6
RNF4-221ENST00000513643 REC8O95072 547 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 HMGB1P09429 215 aaKnown RBP11.3□□□□□ -0.6
RNF4-221ENST00000513643 CNGA1P29973 690 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 HSD17B4P51659 736 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 LRRC41Q15345 812 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 NSMFQ6X4W1 530 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 SLC30A10Q6XR72 485 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 RNF207Q6ZRF8 634 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 FBXO11Q86XK2 927 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 SAMD3Q8N6K7 520 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 ARRDC4Q8NCT1 418 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 SYTL5Q8TDW5 730 aaPredicted RBP11.3□□□□□ -0.6
RNF4-221ENST00000513643 IL17RAQ96F46 866 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 HTATIP2Q9BUP3 242 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 AMNQ9BXJ7 453 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 UPF3AQ9H1J1 476 aaKnown RBP11.3□□□□□ -0.6
RNF4-221ENST00000513643 VAT1LQ9HCJ6 419 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 MAP3K20Q9NYL2 800 aaKnown RBP11.3□□□□□ -0.6
RNF4-221ENST00000513643 COL20A1Q9P218 1284 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 BRPF3Q9ULD4 1205 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 FAM184BQ9ULE4 1060 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 GNEQ9Y223 722 aaKnown RBP11.3□□□□□ -0.6
RNF4-221ENST00000513643 LCTP09848 1927 aa11.3□□□□□ -0.6
RNF4-221ENST00000513643 BAZ2BQ9UIF8 2168 aaKnown RBP11.3□□□□□ -0.6
RNF4-221ENST00000513643 PNMA6FA0A0J9YX94 578 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 CALM1P0DP23 149 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 CALM2P0DP24 149 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 CALM3P0DP25 149 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 RARBP10826 455 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 CST5P28325 142 aaPredicted RBP11.29□□□□□ -0.6
RNF4-221ENST00000513643 ALDH5A1P51649 535 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms