RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 ZMYND15Q9H091 742 aa18.19■□□□□ 0.5
SQSTM1-213ENST00000510187 MTMR7Q9Y216 660 aa18.19■□□□□ 0.5
SQSTM1-213ENST00000510187 SSC5DA1L4H1 1573 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 PRPF3O43395 683 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 CTNND1O60716 968 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 ASNSP08243 561 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 CTCFLQ8NI51 663 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 SPATA20Q8TB22 786 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 ARID3AQ99856 593 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 GLIS2Q9BZE0 524 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 NMRK2Q9NPI5 230 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 FANCLQ9NW38 375 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 NYAP2Q9P242 653 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 ZNF215Q9UL58 517 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 FZD1Q9UP38 647 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 PCDHB6Q9Y5E3 794 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 PHLPP2Q6ZVD8 1323 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 TRIM75PA6NK02 468 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 POLR2DO15514 142 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 ACTN4O43707 911 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 ZNF18P17022 549 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 BMP6P22004 513 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 ZNF397Q8NF99 534 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 WRNIP1Q96S55 665 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 PHF20Q9BVI0 1012 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 OGFRQ9NZT2 677 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 SERTAD1Q9UHV2 236 aa18.18■□□□□ 0.5
SQSTM1-213ENST00000510187 ERCC5P28715 1186 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 INPP5BP32019 993 aa18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 KRT2P35908 639 aa18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 FUT2Q10981 343 aa18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 NR5A1Q13285 461 aa18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 PRKG1Q13976 671 aa18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 SIAH1Q8IUQ4 282 aa18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 MKL1Q969V6 931 aa18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 CDCA5Q96FF9 252 aa18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 ZNF112Q9UJU3 913 aa18.17■□□□□ 0.5
SQSTM1-213ENST00000510187 KIF5BP33176 963 aa18.16■□□□□ 0.5
SQSTM1-213ENST00000510187 NF2P35240 595 aa18.16■□□□□ 0.5
SQSTM1-213ENST00000510187 TBX2Q13207 712 aaPredicted RBP18.16■□□□□ 0.5
SQSTM1-213ENST00000510187 MAP1SQ66K74 1059 aaPredicted RBP18.16■□□□□ 0.5
SQSTM1-213ENST00000510187 FERMT2Q96AC1 680 aa18.16■□□□□ 0.5
SQSTM1-213ENST00000510187 KLRG1Q96E93 195 aa18.16■□□□□ 0.5
SQSTM1-213ENST00000510187 BRMS1Q9HCU9 246 aa18.16■□□□□ 0.5
SQSTM1-213ENST00000510187 FOXN1O15353 648 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 ARHGAP6O43182 974 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 ZSCAN12O43309 604 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 PPP1R12BO60237 982 aaPredicted RBP18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 ETF1P62495 437 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 GRIN1Q05586 938 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 GRM4Q14833 912 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 PKN1Q16512 942 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 UTP14CQ5TAP6 766 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 LDHDQ86WU2 507 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 CMTR1Q8N1G2 835 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 OXER1Q8TDS5 423 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 ARHGEF10LQ9HCE6 1279 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 GINM1Q9NU53 330 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 GOLGA6L9A6NEM1 432 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 RAD21O60216 631 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 RASGRP2Q7LDG7 609 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 CCDC82Q8N4S0 544 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 ZKSCAN4Q969J2 545 aaPredicted RBP18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 CSRNP2Q9H175 543 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 INTS13Q9NVM9 706 aa18.15■□□□□ 0.5
SQSTM1-213ENST00000510187 A0A1W2PRG0 241 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 USP17L5A8MUK1 530 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 USP2O75604 605 aaPredicted RBP18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 PLEKHA8P1O95397 391 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 PARP1P09874 1014 aaKnown RBP18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 PRR29P0C7W0 189 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 PDHBP11177 359 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 SPECC1Q5M775 1068 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 SYT10Q6XYQ8 523 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 CCDC84Q86UT8 332 aaPredicted RBP18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 SCYL3Q8IZE3 742 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 MAD2L2Q9UI95 211 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 NFE2L3Q9Y4A8 694 aa18.14■□□□□ 0.49
SQSTM1-213ENST00000510187 ECE1P42892 770 aa18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 CBX1P83916 185 aa18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 USP17L2Q6R6M4 530 aa18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 TMTC3Q6ZXV5 915 aa18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 STAG2Q8N3U4 1231 aa18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.13■□□□□ 0.493e-24■■□□□ 13.5
SQSTM1-213ENST00000510187 ACER1Q8TDN7 264 aa18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 PYM1Q9BRP8 204 aaKnown RBP18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 SRRTQ9BXP5 876 aaKnown RBP18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 PICK1Q9NRD5 415 aa18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 DDX41Q9UJV9 622 aaKnown RBP18.13■□□□□ 0.49
SQSTM1-213ENST00000510187 PALM3A6NDB9 673 aaPredicted RBP18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 TMEM232C9JQI7 657 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 SLFN14P0C7P3 912 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 GOLGA8HP0CJ92 632 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 GNAQP50148 359 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 FMR1Q06787 632 aaKnown RBP eCLIP18.12■□□□□ 0.495e-7■■□□□ 13
SQSTM1-213ENST00000510187 SPECC1LQ69YQ0 1117 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 SH3RF1Q7Z6J0 888 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 TMEM139Q8IV31 216 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 TNFRSF25Q93038 417 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms