RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 SNHG28P0DPA3 235 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 CASQ1P31415 396 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 NAPAP54920 295 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 ATP2C1P98194 919 aaPredicted RBP12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 TERF2Q15554 542 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 TMCO3Q6UWJ1 677 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 TMEM139Q8IV31 216 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 CCDC148Q8NFR7 591 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 RRP36Q96EU6 259 aaKnown RBP12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 PANX2Q96RD6 677 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 PIM2Q9P1W9 311 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 PI4KBQ9UBF8 816 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 SERTAD1Q9UHV2 236 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 PCDHA6Q9UN73 950 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 PCDHA8Q9Y5H6 950 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 SLFN14P0C7P3 912 aa12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 TRAPPC10P48553 1259 aa12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 NR1I3Q14994 352 aa12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 ARHGAP29Q52LW3 1261 aa12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 RSBN1LQ6PCB5 846 aaPredicted RBP12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 GRAMD1CQ8IYS0 662 aa12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 SYMPKQ92797 1274 aaKnown RBP12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 GPCPD1Q9NPB8 672 aa12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 SEC63Q9UGP8 760 aaKnown RBP12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 V9GYY5 206 aaPredicted RBP12.43□□□□□ -0.42
SH3RF1-203ENST00000508685 CCDC194A0A1B0GVG4 234 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 URI1O94763 535 aaPredicted RBP12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 BMP6P22004 513 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 INF2Q27J81 1249 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 CERKLQ49MI3 558 aaPredicted RBP12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 FILIP1LQ4L180 1135 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 ASPRV1Q53RT3 343 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 JAKMIP3Q5VZ66 844 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 GPR161Q8N6U8 529 aaKnown RBP12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 DAGLBQ8NCG7 672 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 GSDMAQ96QA5 445 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 ZMYND12Q9H0C1 365 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 RIOX1Q9H6W3 641 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 PSME4Q14997 1843 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 A0A1B0GTH6 734 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 CLRN2A0PK11 232 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 SPDYE2BA6NHP3 402 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 ACTN4O43707 911 aaKnown RBP12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 RAD21O60216 631 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 TADA3O75528 432 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 GDF11O95390 407 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 PRR29P0C7W0 189 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 SPDYE6P0CI01 402 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 MAP3K9P80192 1104 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 ZNF543Q08ER8 600 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 IL17AQ16552 155 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 SPATA1Q5VX52 437 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 TTBK2Q6IQ55 1244 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 KCTD1Q719H9 257 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 TC2NQ8N9U0 490 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 CCDC51Q96ER9 411 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 BCS1LQ9Y276 419 aa12.42□□□□□ -0.42
SH3RF1-203ENST00000508685 MYH4Q9Y623 1939 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 CCDC66A2RUB6 948 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 SMCO2A6NFE2 343 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 TCP10L2B9ZVM9 353 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 TMEM232C9JQI7 657 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 AKR1B15C9JRZ8 316 aaPredicted RBP12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 VIL1P09327 827 aaKnown RBP12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 SLC16A2P36021 539 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 CLCN6P51797 869 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 GRIPAP1Q4V328 841 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 DALRD3Q5D0E6 543 aaKnown RBP12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 TATDN1Q6P1N9 297 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 DHX58Q96C10 678 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 CCDC17Q96LX7 622 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 CSRNP1Q96S65 589 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 GMLQ99445 158 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 TRIM34Q9BYJ4 488 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 INTS13Q9NVM9 706 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 ZHX1Q9UKY1 873 aaPredicted RBP12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 ATRNL1Q5VV63 1379 aa12.41□□□□□ -0.42
SH3RF1-203ENST00000508685 NPM3O75607 178 aaKnown RBP12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 CCDC175P0C221 793 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 EEF2P13639 858 aaKnown RBP12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 SMARCA1P28370 1054 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 JAG1P78504 1218 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 SEPT2Q15019 361 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 GALNT17Q6IS24 598 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 PPFIBP1Q86W92 1011 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 ADGRF4Q8IZF3 695 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 C4orf32Q8N8J7 132 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 COA7Q96BR5 231 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 JMJD4Q9H9V9 463 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 ZRANB2O95218 330 aaKnown RBP eCLIP12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 CDC25AP30304 524 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 GNG11P61952 73 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 CCDC96Q2M329 555 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 SH3RF1Q7Z6J0 888 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 SIAH1Q8IUQ4 282 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 CCDC12Q8WUD4 166 aaPredicted RBP12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 ZNF446Q9NWS9 450 aa12.4□□□□□ -0.42
SH3RF1-203ENST00000508685 PPP1R11O60927 126 aaPredicted RBP12.39□□□□□ -0.43
SH3RF1-203ENST00000508685 ENTPD3O75355 529 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms