RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 FBXO40Q9UH90 709 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 SEPT9Q9UHD8 586 aaPredicted RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 HERC5Q9UII4 1024 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 RAB23Q9ULC3 237 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 MTUS1Q9ULD2 1270 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CCNT1O60563 726 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 SLC25A27O95847 323 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 INHAP05111 366 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 HNRNPCP07910 306 aaKnown RBP eCLIP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 BMP3P12645 472 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 ARPP19P56211 112 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PSMC1P62191 440 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 POU5F1Q01860 360 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CCSAPQ6IQ19 270 aaPredicted RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 ZNF467Q7Z7K2 595 aaPredicted RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PCGF5Q86SE9 256 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 ANKRD23Q86SG2 305 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 MB21D1Q8N884 522 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CCDC148Q8NFR7 591 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PRPF31Q8WWY3 499 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 IFT74Q96LB3 600 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 SPATA33Q96N06 139 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 ALS2CR12Q96Q35 445 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 TRIM5Q9C035 493 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 SAGE1Q9NXZ1 904 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 TMA7Q9Y2S6 64 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 ATRXP46100 2492 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 COL1A1P02452 1464 aaPredicted RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CDK5RAP2Q96SN8 1893 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 SHTN1A0MZ66 631 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 MACROD2A1Z1Q3 448 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CASTP20810 708 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 ACTN2P35609 894 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 ARHGAP4P98171 946 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 TFAP4Q01664 338 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PPP2R5DQ14738 602 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 VPS36Q86VN1 386 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 OTUD6BQ8N6M0 293 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 RHPN1Q8TCX5 695 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CCDC17Q96LX7 622 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 TSPAN18Q96SJ8 248 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 MED10Q9BTT4 135 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 IMPG2Q9BZV3 1241 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 DACH1Q9UI36 760 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 KDM3BQ7LBC6 1761 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PFASO15067 1338 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 MSCO60682 206 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 STAMBPO95630 424 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 ELNP15502 786 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 YARSP54577 528 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PPATQ06203 517 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 SF3B3Q15393 1217 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 TSHZ3Q63HK5 1081 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 LLGL2Q6P1M3 1020 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CEP57L1Q8IYX8 460 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 TMTC2Q8N394 836 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 TDRD7Q8NHU6 1098 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CALML4Q96GE6 196 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 RTEL1Q9NZ71 1219 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 DOCK2Q92608 1830 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 SHANK3Q9BYB0 1731 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 UNCXA6NJT0 531 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 DPYSL4O14531 572 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 TLL1O43897 1013 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CCDC159P0C7I6 412 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 VDRP11473 427 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CASP2P42575 452 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 KRT17Q04695 432 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CRHR2Q13324 411 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 DCAF4Q8WV16 495 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 NAP1L4Q99733 375 aaKnown RBP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 XPNPEP3Q9NQH7 507 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PCDHA1Q9Y5I3 950 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 USP54Q70EL1 1684 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 GRXCR2A6NFK2 248 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 WNT10BO00744 389 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 SH3BP5O60239 455 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 MCM5P33992 734 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 MCAMP43121 646 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PAK2Q13177 524 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PPIGQ13427 754 aaKnown RBP eCLIP3.32□□□□□ -1.88
NEDD4-208ENST00000508342 STXBP2Q15833 593 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 SPRYD7Q5W111 196 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 CEP57Q86XR8 500 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 FAM151AQ8WW52 585 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 GLT1D1Q96MS3 346 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 TSG101Q99816 390 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 VRTNQ9H8Y1 702 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 PARP2Q9UGN5 583 aa3.32□□□□□ -1.88
NEDD4-208ENST00000508342 MRC1P22897 1456 aa3.31□□□□□ -1.88
NEDD4-208ENST00000508342 C17orf102A2RUQ5 167 aa3.31□□□□□ -1.88
NEDD4-208ENST00000508342 GPR25O00155 361 aa3.31□□□□□ -1.88
NEDD4-208ENST00000508342 FGFR1OPO95684 399 aaKnown RBP3.31□□□□□ -1.88
NEDD4-208ENST00000508342 ABL1P00519 1130 aa3.31□□□□□ -1.88
NEDD4-208ENST00000508342 HSPA8P11142 646 aaKnown RBP3.31□□□□□ -1.88
NEDD4-208ENST00000508342 COL6A1P12109 1028 aa3.31□□□□□ -1.88
NEDD4-208ENST00000508342 ELF1P32519 619 aa3.31□□□□□ -1.88
NEDD4-208ENST00000508342 COL19A1Q14993 1142 aa3.31□□□□□ -1.88
NEDD4-208ENST00000508342 JAKMIP3Q5VZ66 844 aa3.31□□□□□ -1.88
NEDD4-208ENST00000508342 PROCA1Q8NCQ7 364 aaPredicted RBP3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms