RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-210ENST00000508235 SMCHD1A6NHR9 2005 aa17.4■□□□□ 0.38
RNF4-210ENST00000508235 RXRAP19793 462 aa17.4■□□□□ 0.38
RNF4-210ENST00000508235 RTN1Q16799 776 aa17.4■□□□□ 0.38
RNF4-210ENST00000508235 CCDC144CPQ8IYA2 1237 aa17.4■□□□□ 0.38
RNF4-210ENST00000508235 RRP36Q96EU6 259 aaKnown RBP17.4■□□□□ 0.38
RNF4-210ENST00000508235 TMEM106CQ9BVX2 250 aa17.4■□□□□ 0.38
RNF4-210ENST00000508235 UPF3BQ9BZI7 483 aaKnown RBP17.4■□□□□ 0.38
RNF4-210ENST00000508235 SEC63Q9UGP8 760 aaKnown RBP17.4■□□□□ 0.38
RNF4-210ENST00000508235 RBBP6Q7Z6E9 1792 aaKnown RBP17.4■□□□□ 0.38
RNF4-210ENST00000508235 DNAJC25-GNG10A0A024R161 153 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 PNMA6FA0A0J9YX94 578 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 GOLGA8AA7E2F4 631 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 GOLGA8BA8MQT2 603 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 CYTH3O43739 400 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 PGK2P07205 417 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 METAP2P50579 478 aaKnown RBP eCLIP17.39■□□□□ 0.37
RNF4-210ENST00000508235 EVCP57679 992 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 APOBRQ0VD83 1088 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 ANKRD1Q15327 319 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 CCL14Q16627 93 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 ZNF792Q3KQV3 632 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 USH1GQ495M9 461 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 MUM1L1Q5H9M0 696 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 ZNF467Q7Z7K2 595 aaPredicted RBP17.39■□□□□ 0.37
RNF4-210ENST00000508235 HOMER1Q86YM7 354 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 MCF2L2Q86YR7 1114 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 MSL3Q8N5Y2 521 aaKnown RBP17.39■□□□□ 0.37
RNF4-210ENST00000508235 MAML3Q96JK9 1138 aa17.39■□□□□ 0.37
RNF4-210ENST00000508235 A1CFQ9NQ94 594 aaKnown RBP17.39■□□□□ 0.37
RNF4-210ENST00000508235 MRPL11Q9Y3B7 192 aaKnown RBP17.39■□□□□ 0.37
RNF4-210ENST00000508235 BAZ2BQ9UIF8 2168 aaKnown RBP17.38■□□□□ 0.37
RNF4-210ENST00000508235 POTEB2H3BUK9 544 aa17.38■□□□□ 0.37
RNF4-210ENST00000508235 NSMFQ6X4W1 530 aa17.38■□□□□ 0.37
RNF4-210ENST00000508235 TMTC3Q6ZXV5 915 aa17.38■□□□□ 0.37
RNF4-210ENST00000508235 RAB11FIP4Q86YS3 637 aa17.38■□□□□ 0.37
RNF4-210ENST00000508235 RGS22Q8NE09 1264 aa17.38■□□□□ 0.37
RNF4-210ENST00000508235 PIGSQ96S52 555 aa17.38■□□□□ 0.37
RNF4-210ENST00000508235 HMX1Q9NP08 348 aaPredicted RBP17.38■□□□□ 0.37
RNF4-210ENST00000508235 CYP39A1Q9NYL5 469 aa17.38■□□□□ 0.37
RNF4-210ENST00000508235 PTPDC1A2A3K4 754 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 PLEKHA8P1O95397 391 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 CCL5P13501 91 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 TOB2Q14106 344 aaPredicted RBP17.37■□□□□ 0.37
RNF4-210ENST00000508235 MAP3K21Q5TCX8 1036 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 RNF207Q6ZRF8 634 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 SRBD1Q8N5C6 995 aaKnown RBP17.37■□□□□ 0.37
RNF4-210ENST00000508235 SAMD3Q8N6K7 520 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 CLEC4DQ8WXI8 215 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 C22orf23Q9BZE7 217 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 RNF208Q9H0X6 261 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 ALDH8A1Q9H2A2 487 aaPredicted RBP17.37■□□□□ 0.37
RNF4-210ENST00000508235 FLRT1Q9NZU1 646 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 NRBP1Q9UHY1 535 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 PCDHA1Q9Y5I3 950 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 RPTORQ8N122 1335 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 NID2Q14112 1375 aa17.37■□□□□ 0.37
RNF4-210ENST00000508235 NFIBO00712 420 aa17.36■□□□□ 0.37
RNF4-210ENST00000508235 PRKAR2AP13861 404 aaKnown RBP17.36■□□□□ 0.37
RNF4-210ENST00000508235 CAPN2P17655 700 aa17.36■□□□□ 0.37
RNF4-210ENST00000508235 SLC35G1Q2M3R5 365 aa17.36■□□□□ 0.37
RNF4-210ENST00000508235 FAM133AQ8N9E0 248 aa17.36■□□□□ 0.37
RNF4-210ENST00000508235 ZNF274Q96GC6 653 aaPredicted RBP17.36■□□□□ 0.37
RNF4-210ENST00000508235 MAP3K20Q9NYL2 800 aaKnown RBP17.36■□□□□ 0.37
RNF4-210ENST00000508235 ADD3Q9UEY8 706 aaKnown RBP17.36■□□□□ 0.37
RNF4-210ENST00000508235 SYNGAP1Q96PV0 1343 aa17.36■□□□□ 0.37
RNF4-210ENST00000508235 LOC102724159A0A0B4J2E5 919 aa17.35■□□□□ 0.37
RNF4-210ENST00000508235 ASB14A6NK59 587 aa17.35■□□□□ 0.37
RNF4-210ENST00000508235 MYCP01106 439 aaPredicted RBP17.35■□□□□ 0.37
RNF4-210ENST00000508235 IGHA2P01877 340 aa17.35■□□□□ 0.37
RNF4-210ENST00000508235 RBM25P49756 843 aaKnown RBP17.35■□□□□ 0.37
RNF4-210ENST00000508235 CACNB2Q08289 660 aaPredicted RBP17.35■□□□□ 0.37
RNF4-210ENST00000508235 BAATQ14032 418 aaPredicted RBP17.35■□□□□ 0.37
RNF4-210ENST00000508235 PWP2Q15269 919 aaKnown RBP17.35■□□□□ 0.37
RNF4-210ENST00000508235 MTFR1Q15390 333 aa17.35■□□□□ 0.37
RNF4-210ENST00000508235 MAMDC4Q6UXC1 1216 aa17.35■□□□□ 0.37
RNF4-210ENST00000508235 IL27Q8NEV9 243 aa17.35■□□□□ 0.37
RNF4-210ENST00000508235 MPHOSPH6Q99547 160 aaKnown RBP17.35■□□□□ 0.37
RNF4-210ENST00000508235 TINF2Q9BSI4 451 aa17.35■□□□□ 0.37
RNF4-210ENST00000508235 UNC93B1Q9H1C4 597 aa17.35■□□□□ 0.37
RNF4-210ENST00000508235 RBM27Q9P2N5 1060 aaKnown RBP17.35■□□□□ 0.37
RNF4-210ENST00000508235 CNPY2Q9Y2B0 182 aa17.35■□□□□ 0.37
RNF4-210ENST00000508235 B4DLN1 442 aa17.34■□□□□ 0.37
RNF4-210ENST00000508235 PPP1R11O60927 126 aaPredicted RBP17.34■□□□□ 0.37
RNF4-210ENST00000508235 GJB1P08034 283 aa17.34■□□□□ 0.37
RNF4-210ENST00000508235 TAL1P17542 331 aaPredicted RBP17.34■□□□□ 0.37
RNF4-210ENST00000508235 CALML3P27482 149 aa17.34■□□□□ 0.37
RNF4-210ENST00000508235 PDIA3P30101 505 aaKnown RBP17.34■□□□□ 0.37
RNF4-210ENST00000508235 CYP2C19P33261 490 aa17.34■□□□□ 0.37
RNF4-210ENST00000508235 NEK4P51957 841 aa17.34■□□□□ 0.37
RNF4-210ENST00000508235 MRPL12P52815 198 aaKnown RBP17.34■□□□□ 0.37
RNF4-210ENST00000508235 RPS6P62753 249 aaKnown RBP17.34■□□□□ 0.37
RNF4-210ENST00000508235 CMTR1Q8N1G2 835 aaKnown RBP17.34■□□□□ 0.37
RNF4-210ENST00000508235 CCDC82Q8N4S0 544 aa17.34■□□□□ 0.37
RNF4-210ENST00000508235 PIBF1Q8WXW3 757 aa17.34■□□□□ 0.37
RNF4-210ENST00000508235 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.34■□□□□ 0.374e-7■■■■■ 29.9
RNF4-210ENST00000508235 PAK6Q9NQU5 681 aaPredicted RBP17.34■□□□□ 0.37
RNF4-210ENST00000508235 CNTNAP5Q8WYK1 1306 aa17.33■□□□□ 0.36
RNF4-210ENST00000508235 hCG_1984214I3L0E3 225 aa17.33■□□□□ 0.36
RNF4-210ENST00000508235 MSCO60682 206 aa17.33■□□□□ 0.36
RNF4-210ENST00000508235 CDC27P30260 824 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms